View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_256 (Length: 239)
Name: NF8180A_low_256
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_256 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 36971105 - 36970896
Alignment:
| Q |
14 |
gaaatgaacgatgaaggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaggatctcaaaagaaagca |
113 |
Q |
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| T |
36971105 |
gaaatgaacgatgagggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagca |
36971006 |
T |
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| Q |
114 |
aacagttgatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcaaaaggagaatcgcaagaccggtaatgggga |
213 |
Q |
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| T |
36971005 |
aacagttgatgcaagaatgtgcgacagaattcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatgggga |
36970906 |
T |
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| Q |
214 |
tgctatctgt |
223 |
Q |
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| T |
36970905 |
cgatatctgt |
36970896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 39786381 - 39786341
Alignment:
| Q |
161 |
ggtgaagcatctgacaagtgtcaaaaggagaatcgcaagac |
201 |
Q |
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| T |
39786381 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagac |
39786341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 56067978 - 56068049
Alignment:
| Q |
121 |
gatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcaaaaggagaa |
192 |
Q |
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| T |
56067978 |
gatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaa |
56068049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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