View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_258 (Length: 238)

Name: NF8180A_low_258
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_258
NF8180A_low_258
[»] chr4 (19 HSPs)
chr4 (3-238)||(29123429-29123665)
chr4 (3-238)||(22340575-22340810)
chr4 (3-238)||(4303193-4303428)
chr4 (3-181)||(17826772-17826950)
chr4 (14-234)||(18116384-18116604)
chr4 (9-238)||(8110914-8111143)
chr4 (14-234)||(23158152-23158372)
chr4 (14-234)||(36279205-36279425)
chr4 (14-234)||(51872685-51872905)
chr4 (86-238)||(15705634-15705786)
chr4 (3-238)||(3621498-3621733)
chr4 (1-238)||(12915787-12916024)
chr4 (11-234)||(15649066-15649289)
chr4 (30-111)||(50693772-50693853)
chr4 (30-111)||(36951324-36951405)
chr4 (30-111)||(17469142-17469223)
chr4 (46-117)||(24059760-24059831)
chr4 (176-238)||(17838698-17838760)
chr4 (175-234)||(6614197-6614256)
[»] chr1 (9 HSPs)
chr1 (3-238)||(49369763-49369998)
chr1 (14-234)||(41342810-41343030)
chr1 (14-210)||(27029976-27030172)
chr1 (14-234)||(10003931-10004151)
chr1 (46-135)||(24545091-24545180)
chr1 (5-114)||(28520830-28520939)
chr1 (52-111)||(37668976-37669035)
chr1 (47-114)||(26996083-26996150)
chr1 (171-238)||(5557263-5557330)
[»] chr3 (14 HSPs)
chr3 (3-238)||(8595253-8595488)
chr3 (11-238)||(23603259-23603485)
chr3 (3-234)||(42462720-42462951)
chr3 (14-234)||(23571623-23571843)
chr3 (3-238)||(48547550-48547785)
chr3 (14-234)||(3514684-3514904)
chr3 (11-234)||(17153806-17154029)
chr3 (14-234)||(9819060-9819280)
chr3 (59-234)||(53152132-53152307)
chr3 (3-178)||(42459294-42459469)
chr3 (30-111)||(16664099-16664180)
chr3 (30-111)||(52196409-52196490)
chr3 (38-111)||(39632858-39632931)
chr3 (47-111)||(10754186-10754250)
[»] scaffold0032 (1 HSPs)
scaffold0032 (3-238)||(58387-58622)
[»] scaffold0041 (1 HSPs)
scaffold0041 (14-234)||(74298-74518)
[»] chr7 (18 HSPs)
chr7 (14-234)||(40891766-40891986)
chr7 (14-234)||(586784-587004)
chr7 (11-234)||(37075589-37075812)
chr7 (14-234)||(12121586-12121806)
chr7 (14-234)||(24819697-24819917)
chr7 (26-234)||(36575396-36575604)
chr7 (11-234)||(9403131-9403347)
chr7 (11-234)||(34981847-34982070)
chr7 (3-214)||(20705483-20705694)
chr7 (3-214)||(20873527-20873738)
chr7 (30-111)||(22865766-22865847)
chr7 (30-111)||(47548969-47549050)
chr7 (30-111)||(47553412-47553493)
chr7 (30-114)||(27987585-27987669)
chr7 (35-114)||(27869020-27869099)
chr7 (30-135)||(18815411-18815516)
chr7 (41-114)||(8457213-8457286)
chr7 (33-114)||(5196753-5196834)
[»] chr5 (10 HSPs)
chr5 (3-238)||(11266021-11266256)
chr5 (9-238)||(27891694-27891923)
chr5 (15-223)||(5824972-5825180)
chr5 (11-234)||(6678577-6678798)
chr5 (34-238)||(29150301-29150504)
chr5 (30-111)||(29322916-29322997)
chr5 (26-114)||(31962686-31962774)
chr5 (30-111)||(38931892-38931973)
chr5 (33-111)||(8896369-8896447)
chr5 (119-234)||(10462244-10462359)
[»] chr2 (9 HSPs)
chr2 (22-238)||(38938468-38938684)
chr2 (14-231)||(30275892-30276109)
chr2 (11-234)||(32349874-32350097)
chr2 (11-223)||(23384854-23385066)
chr2 (15-223)||(21963419-21963627)
chr2 (15-188)||(21964639-21964812)
chr2 (64-234)||(27914653-27914823)
chr2 (30-111)||(1258584-1258665)
chr2 (31-139)||(22300858-22300966)
[»] chr6 (8 HSPs)
chr6 (3-224)||(667285-667496)
chr6 (14-234)||(18295398-18295618)
chr6 (3-238)||(28604878-28605113)
chr6 (14-210)||(2894261-2894457)
chr6 (30-214)||(7218368-7218552)
chr6 (14-139)||(17228031-17228156)
chr6 (30-111)||(5391535-5391616)
chr6 (87-210)||(9759578-9759701)
[»] chr8 (6 HSPs)
chr8 (14-234)||(26077728-26077948)
chr8 (9-202)||(31423238-31423431)
chr8 (30-210)||(29532381-29532561)
chr8 (30-224)||(26390260-26390454)
chr8 (30-111)||(10801698-10801779)
chr8 (170-234)||(2959748-2959812)
[»] scaffold0003 (1 HSPs)
scaffold0003 (30-214)||(224744-224928)
[»] scaffold0289 (1 HSPs)
scaffold0289 (30-135)||(11164-11269)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 29123429 - 29123665
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggtt-cccttaaaagttaacatttttgtttggcgtctctttctgaatagac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29123429 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggtttcccttaaaagttaacatttttgtttggcgtctctttctgaatagac 29123528  T
Q  102 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgtt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  29123529 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagagaccatttgtt 29123628  T
Q  202 ttttcaatgtgatttttatggtcaattatggctcttg 238  Q
    ||||||||||||||||||||||| |||||||||||||    
T  29123629 ttttcaatgtgatttttatggtcgattatggctcttg 29123665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 22340810 - 22340575
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22340810 tggacatcaatatcactgcagtgtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctaaatagact 22340711  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  22340710 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgtggccttgtgtggtaaggaggaggaaagagatcatttgttt 22340611  T
Q  203 tttcaatgtgatttttatggtcaattatggctcttg 238  Q
    ||||||||||||| |||||||| |||||||||||||    
T  22340610 tttcaatgtgattattatggtcgattatggctcttg 22340575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 4303193 - 4303428
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  4303193 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcgtctttttctgaatagact 4303292  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  | |||||||||    
T  4303293 tgctacaaaggacaatcttcgcaagaggaatatccttcatgctacagattcttcttgtgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 4303392  T
Q  203 tttcaatgtgatttttatggtcaattatggctcttg 238  Q
    ||||||||||||| |||||||| |||||| ||||||    
T  4303393 tttcaatgtgattattatggtcgattatgactcttg 4303428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 17826772 - 17826950
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17826772 tggacatcaatatcactgtagagtttgatcaatttttatggcttaaagtggtttccttaaaagttaacatttttgtttggcgtctctttctgaatagact 17826871  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggag 181  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17826872 tgctacaaaggagaatcttcgcaagaggaatgtccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggag 17826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 18116384 - 18116604
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18116384 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaagg 18116483  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    |||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  18116484 acaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtga 18116583  T
Q  214 tttttatggtcaattatggct 234  Q
    || ||||||||  ||||||||    
T  18116584 ttattatggtcggttatggct 18116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 8111143 - 8110914
Alignment:
Q  9 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 108  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||    
T  8111143 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtatggcgtctctttctgaatagacttgcaac 8111044  T
Q  109 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 208  Q
    |||||||||||| ||||||||||| ||| || ||| | |  ||   ||||| |||||||||||||||||||||||||||||  | ||||| |||||||||    
T  8111043 aaaggacaacctgcgcaagaggaacgtctttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttcttttttcaa 8110944  T
Q  209 tgtgatttttatggtcaattatggctcttg 238  Q
    ||||||  |||||||| |||||||||||||    
T  8110943 tgtgatcattatggtcgattatggctcttg 8110914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 23158152 - 23158372
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||| | |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23158152 atcactgcatattttgatcaatttttatggcttaaagcagtccccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 23158251  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||| |||    
T  23158252 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatatga 23158351  T
Q  214 tttttatggtcaattatggct 234  Q
    || |||||||| |||||||||    
T  23158352 ttattatggtcgattatggct 23158372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 36279205 - 36279425
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  36279205 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaagg 36279304  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||| ||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||| ||||  ||||||||||||| |||||||     
T  36279305 ataatcttcgtaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagaaaagggatcatttgtttttccaatgtgc 36279404  T
Q  214 tttttatggtcaattatggct 234  Q
    || |||||||| |||||||||    
T  36279405 ttattatggtcgattatggct 36279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 51872905 - 51872685
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  51872905 atcactgcagattttgttcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 51872806  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||| | ||  || || | ||||||||||||||||||  ||||||||||||| ||||| ||    
T  51872805 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcctatggtgctttatttggtaaggaggaggaaagggatcatttgtttttccaatgcga 51872706  T
Q  214 tttttatggtcaattatggct 234  Q
    || |||||||| |||||||||    
T  51872705 ttattatggtcgattatggct 51872685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 86 - 238
Target Start/End: Original strand, 15705634 - 15705786
Alignment:
Q  86 ctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggagg 185  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggagg 15705733  T
Q  186 aaagatatcatttgttttttcaatgtgatttttatggtcaattatggctcttg 238  Q
    ||||  |||||||||||||||||||||||| |||||||| |||||||||||||    
T  15705734 aaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttg 15705786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 3621733 - 3621498
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  3621733 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 3621634  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||| |||||||||||||| || |||||||| || ||| ||| | |  ||   ||||| ||| |||||||||||||||||||||||||| | ||||| |||    
T  3621633 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcgaccttgtgtggtaaggaggaggaaagagaccattttttt 3621534  T
Q  203 tttcaatgtgatttttatggtcaattatggctcttg 238  Q
    || |||||||||  ||||||||  ||||||||||||    
T  3621533 ttccaatgtgatcattatggtcggttatggctcttg 3621498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 12916024 - 12915787
Alignment:
Q  1 gatggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaataga 100  Q
    |||||||| ||| ||||||| ||| ||| | ||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12916024 gatggacaccaagatcactgaagattttaaccaattcttgtggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctctttctgaataga 12915925  T
Q  101 cttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgt 200  Q
     ||||||||||| ||||| | ||||| ||||||||||||  |||||   ||  ||||||||||||||||||||||||||||||||||||| |  |||| |    
T  12915924 attgctacaaagaacaacttgcgcaaaaggaatgtccttgcggctaacaatgtttcttgtgcggccttgtgtggtaaggaggaggaaagagacaatttat 12915825  T
Q  201 tttttcaatgtgatttttatggtcaattatggctcttg 238  Q
    |||||||||||||   |||||| |  ||||||||||||    
T  12915824 tttttcaatgtgaccattatgggcggttatggctcttg 12915787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 15649066 - 15649289
Alignment:
Q  11 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 110  Q
    ||||||| ||||||||||||||| || |||||||||||||| || || ||||| ||||| |||||||||||| | |||||||||||| | ||||||||||    
T  15649066 aatatcaatgcagagtttgatcatttattatggcttaaagcagtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaa 15649165  T
Q  111 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    |||| || ||||||||| ||||||||||  |||||||  |   || |||||   | || ||||||||||||||||||||| | ||||| |||||||||||    
T  15649166 aggataatcttcgcaagcggaatgtcctcgaggctaccaacgttttttgtggtactttatgtggtaaggaggaggaaagagaccatttattttttcaatg 15649265  T
Q  211 tgatttttatggtcaattatggct 234  Q
    ||||| ||||||||  ||||||||    
T  15649266 tgattattatggtcggttatggct 15649289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 50693772 - 50693853
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  50693772 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 50693853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 36951405 - 36951324
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  36951405 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtatggcgtctctttctgaatagacttgctacaaa 36951324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 17469142 - 17469223
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||| ||||||||| | ||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||    
T  17469142 atcattttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcatctctttctgaatagacttgctacaaa 17469223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 24059831 - 24059760
Alignment:
Q  46 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaa 117  Q
    |||| ||||| | ||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  24059831 taaaacggtttcgttaaaagttaatatttttgtttgacgtctctttatgagtagacttgctacaaaggacaa 24059760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 17838698 - 17838760
Alignment:
Q  176 aaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggctcttg 238  Q
    ||||||||| ||||  |||||||||||||||||||||||| |||||||| |||||||||||||    
T  17838698 aaggaggagaaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttg 17838760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 6614197 - 6614256
Alignment:
Q  175 taaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 234  Q
    |||||||||||||||  ||||||||||||| |||||||||| ||||||||  ||||||||    
T  6614197 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 6614256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 49369998 - 49369763
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49369998 tggacaccaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttttttggcgtctctttctgaatagact 49369899  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  49369898 tgctacaaaggacaatcttcgcaagaggaatgtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggaggaggaaagggatcatttgttt 49369799  T
Q  203 tttcaatgtgatttttatggtcaattatggctcttg 238  Q
    ||||||||||||| |||||||| |||||||||||||    
T  49369798 tttcaatgtgattattatggtcgattatggctcttg 49369763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 41342810 - 41343030
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41342810 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaagg 41342909  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    |||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  41342910 acaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtga 41343009  T
Q  214 tttttatggtcaattatggct 234  Q
    || ||||||||  ||||||||    
T  41343010 ttattatggtcggttatggct 41343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 27030172 - 27029976
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||| ||||||||||||||| |||||    
T  27030172 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttttgaatagacttgctataaagg 27030073  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    | || ||||| ||||||||||||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||| ||||||||||||| |||||    
T  27030072 ataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagagatcatttgtttttccaatg 27029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 10004151 - 10003931
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| ||||||||||||||||||||||||||||    
T  10004151 atcactgcagattttgatcaatttttatggcttaaagcggttcctttaaaagtcaatatttttgcttggcggctctttctgaatagacttgctacaaagg 10004052  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||| |||| ||||||| || |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  |||||||||||||  |||| ||    
T  10004051 ataatcttcgtaagaagaatgtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggaggaaagggatcatttgtttttcgaatgcga 10003952  T
Q  214 tttttatggtcaattatggct 234  Q
     ||||||||||  ||||||||    
T  10003951 cttttatggtcggttatggct 10003931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 24545091 - 24545180
Alignment:
Q  46 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 135  Q
    ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||    
T  24545091 taaagtggttccgttaaaagttaatatttttgtctggcgtctctttctgaacagacttgctacaaaggataatcttcgaaagagaaatgt 24545180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 28520830 - 28520939
Alignment:
Q  5 gacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttg 104  Q
    ||||| || |||| || ||||||| |||||||||| ||||||||||||||| | ||||| || || || ||||| ||||||||||| |||||||||||||    
T  28520830 gacattaacatcattgaagagtttcatcaatttttgtggcttaaagcggtttcgttaaaggtgaatatatttgtatggcgtctcttcctgaatagacttg 28520929  T
Q  105 ctacaaagga 114  Q
    ||||| ||||    
T  28520930 ctacagagga 28520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 37669035 - 37668976
Alignment:
Q  52 ggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||    
T  37669035 ggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgatacaaa 37668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 26996150 - 26996083
Alignment:
Q  47 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 114  Q
    |||||| |||| ||||| ||||| |||||||| ||||||||||||||||||||||||| | |||||||    
T  26996150 aaagcgattccgttaaaggttaatatttttgtctggcgtctctttctgaatagacttggtgcaaagga 26996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 5557330 - 5557263
Alignment:
Q  171 gtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggctcttg 238  Q
    |||||||||||||||||||  | |||||||||||| ||||||||  |||||||| |||||| ||||||    
T  5557330 gtggtaaggaggaggaaagggaccatttgtttttttaatgtgatcattatggtcgattatgactcttg 5557263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 8595488 - 8595253
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8595488 tggacatcaatatcattgcagagtttgatcaatttctatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagact 8595389  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  | |||||||||    
T  8595388 tgctacaaaggacaatcttcgtaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgctaaggaggaggaaagggaccatttgttt 8595289  T
Q  203 tttcaatgtgatttttatggtcaattatggctcttg 238  Q
    ||||||||||||| ||||||||  ||||||||||||    
T  8595288 tttcaatgtgattattatggtcgtttatggctcttg 8595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 23603485 - 23603259
Alignment:
Q  11 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 110  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  23603485 aatatcattgcggagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgactctttctgaatagacttgctacta 23603386  T
Q  111 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  23603385 aggacaaccttcgcaagaggaatgtccttca-gctacaaatacttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatctgttttttcaatg 23603287  T
Q  211 tgatttttatggtcaattatggctcttg 238  Q
    |||||||||||||| | |||||||||||    
T  23603286 tgatttttatggtcgactatggctcttg 23603259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 42462951 - 42462720
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42462951 tggacatcaacattactgcagagtttgatcaatttttatggcttaaaacggctcccttaaaagttaacatttttgtttggcgtttctttctgaatagact 42462852  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||| |||||| || |||||||||||||||| |||||||||||    
T  42462851 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcatcttgtgcgaccttgtatgataaggaggaggaaagagatcatttgttt 42462752  T
Q  203 tttcaatgtgatttttatggtcaattatggct 234  Q
    ||||||||||||| ||||||||  ||||||||    
T  42462751 tttcaatgtgattattatggtcggttatggct 42462720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 23571623 - 23571843
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  23571623 atcactgtagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtatgacgtctctttctgaatagacttgctacaaagg 23571722  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    |||| |||||||||| |||||||||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  23571723 acaatcttcgcaagacgaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 23571822  T
Q  214 tttttatggtcaattatggct 234  Q
    || ||||||||  ||||||||    
T  23571823 ttattatggtcggttatggct 23571843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 48547785 - 48547550
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||    
T  48547785 tggacttcaacatcactgcagagtttaatcaatttttatggcttaaagcagttccattaaaggttaatatttttgtctggcgtctctttctgaatagact 48547686  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||| |||||||||||||| ||||||||||| |||||| ||| | |  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  48547685 tgcaacaaaggacaacctgcgcaagaggaacgtccttgaggtttccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 48547586  T
Q  203 tttcaatgtgatttttatggtcaattatggctcttg 238  Q
    ||||||||||||  |||||||| |||||||||||||    
T  48547585 tttcaatgtgatcattatggtcgattatggctcttg 48547550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 3514904 - 3514684
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  3514904 atcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaagg 3514805  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||||||||||||||| ||| ||||||   ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  3514804 ataatcttcgcaagaggaatgttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 3514705  T
Q  214 tttttatggtcaattatggct 234  Q
    || ||||||||  ||||||||    
T  3514704 ttattatggtcgcttatggct 3514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 17153806 - 17154029
Alignment:
Q  11 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  17153806 aatatcaatgcagagtttgatcaatttttatggcttaaagcggttccattaaaagttaatatttttatttggcggctctttatgaatagacttgctacaa 17153905  T
Q  111 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  ||||||||||||| |||||    
T  17153906 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagggatcatttgtttttccaatg 17154005  T
Q  211 tgatttttatggtcaattatggct 234  Q
    ||||| ||||||||  ||||||||    
T  17154006 tgattattatggtcggttatggct 17154029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 9819280 - 9819060
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| || |||||||||||||||||||||||||    
T  9819280 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttatgtttggcggctttttctgaatagacttgctacaaagg 9819181  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||| ||||||||||||||| |||||||  ||  ||||||||  || || ||||||||||||||||| |   ||||||||||||| ||||| ||    
T  9819180 ataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggacaaggatcatttgtttttccaatgcga 9819081  T
Q  214 tttttatggtcaattatggct 234  Q
     ||||||||||  ||||||||    
T  9819080 cttttatggtcgtttatggct 9819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 53152132 - 53152307
Alignment:
Q  59 ttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttctt 158  Q
    ||||||||||| |||||||||||| | ||||||| |||| |||||||||||||||| || ||||||||||||||||||||  |||||||  ||  || ||    
T  53152132 ttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgtttttt 53152231  T
Q  159 gtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 234  Q
    |||  || || ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||    
T  53152232 gtggtgctttatgtggcaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggct 53152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 42459294 - 42459469
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    |||||| ||| ||||||| ||| ||| | ||||| ||||||||||| | |||||| ||||| ||||||||||||||||| ||||| |||||||||||| |    
T  42459294 tggacaacaacatcactgaagattttaaccaattcttatggcttaaggaggttccgttaaaggttaacatttttgtttgacgtctttttctgaatagaat 42459393  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatact-tcttgtgcggccttgtgtggtaag 178  Q
    |||||||||||||||| | | ||| |||||||||||| |||||| | | | | ||||||||| ||||||||||||||    
T  42459394 tgctacaaaggacaacttgcacaaaaggaatgtccttgaggcta-acaaagtatcttgtgcgaccttgtgtggtaag 42459469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 16664180 - 16664099
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  16664180 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 16664099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 52196490 - 52196409
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  52196490 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgcctctttctgaatagacttgctacaaa 52196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 39632858 - 39632931
Alignment:
Q  38 ttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  39632858 ttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 39632931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 10754250 - 10754186
Alignment:
Q  47 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    ||||||||||| || || |||||||| |||||||||||||||||| |||||||||||||||||||    
T  10754250 aaagcggttccgttgaaggttaacatctttgtttggcgtctctttatgaatagacttgctacaaa 10754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 58387 - 58622
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  58387 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 58486  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||  | | |||||||    
T  58487 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctaccaatatttcttgtgcggccttgtgtggtaaggaggaggaaagggaccgtttgttt 58586  T
Q  203 tttcaatgtgatttttatggtcaattatggctcttg 238  Q
    |||||||||||   ||||||||  ||||||||||||    
T  58587 tttcaatgtgacaattatggtcggttatggctcttg 58622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 74518 - 74298
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74518 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 74419  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    |||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||||    
T  74418 acaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtga 74319  T
Q  214 tttttatggtcaattatggct 234  Q
    || ||||||||| ||||||||    
T  74318 ttattatggtcagttatggct 74298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 40891766 - 40891986
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40891766 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 40891865  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    |||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||||    
T  40891866 acaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtga 40891965  T
Q  214 tttttatggtcaattatggct 234  Q
    || ||||||||| ||||||||    
T  40891966 ttattatggtcagttatggct 40891986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 587004 - 586784
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  587004 atcactgcagagtttgatcgttttttatggcttaaagcggttcccttaaaggttaatatttttgtttggcgtctctttttgaatagacttgctacaaagg 586905  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    |||| ||||| || |||||||||||| |||||||  ||  |||  ||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  586904 acaatcttcgtaaaaggaatgtccttgaggctaccaatgtttcaagtggggccttatgtggtaaggaggaggaaagggatcatttgttttttcaatgtga 586805  T
Q  214 tttttatggtcaattatggct 234  Q
    || |||||||| |||||||||    
T  586804 ttattatggtcgattatggct 586784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 37075589 - 37075812
Alignment:
Q  11 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||| |||| ||||||||||||    
T  37075589 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaa 37075688  T
Q  111 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||| ||||||||||||||  |||||||||||||||||||    
T  37075689 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggaggaaagggatcatttgttttttcaatg 37075788  T
Q  211 tgatttttatggtcaattatggct 234  Q
    ||||| ||||||||  ||||||||    
T  37075789 tgattattatggtcggttatggct 37075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 12121806 - 12121586
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  12121806 atcactgcaaattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 12121707  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || |||||||||||||||||||   ||||||||||||| ||||| ||    
T  12121706 ataatcttcgcaagaggaatgttctagaggataccaatgtttcttgtggtgctttatgtggtaaggaggaggaaatggatcatttgtttttccaatgcga 12121607  T
Q  214 tttttatggtcaattatggct 234  Q
    || |||||||| |||||||||    
T  12121606 ttattatggtcgattatggct 12121586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 24819917 - 24819697
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||    
T  24819917 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaagg 24819818  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||| |||||||| |||||| |||||||  |   ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  24819817 ataatcttcgtaagaggaacgtccttgaggctaccaacgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 24819718  T
Q  214 tttttatggtcaattatggct 234  Q
     | ||||||||  ||||||||    
T  24819717 ctattatggtcgtttatggct 24819697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 36575396 - 36575604
Alignment:
Q  26 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgca 125  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| || ||||| |    
T  36575396 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 36575495  T
Q  126 agaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtca 225  Q
    |||||||||||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  ||||||||||||| ||||| || ||||||||||     
T  36575496 agaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgacttttatggtcg 36575595  T
Q  226 attatggct 234  Q
     ||||||||    
T  36575596 tttatggct 36575604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 9403131 - 9403347
Alignment:
Q  11 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||         |||||| ||||||||||||    
T  9403131 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttgg-------acctgaatcgacttgctacaa 9403223  T
Q  111 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||| |||||    
T  9403224 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 9403323  T
Q  211 tgatttttatggtcaattatggct 234  Q
    ||||| ||||||||  ||||||||    
T  9403324 tgattattatggtcggttatggct 9403347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 34982070 - 34981847
Alignment:
Q  11 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 110  Q
    ||||||| ||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||||||| | |||||||||||| | ||||||||||    
T  34982070 aatatcaatgcagagtttgatcagtttttatggcttaaagcggtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaa 34981971  T
Q  111 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    |||| || ||||||||||||||||||||  |||||||  |   ||  ||||  || || ||||||||||||||||||||| | ||||| || ||||||||    
T  34981970 aggataatcttcgcaagaggaatgtcctcgaggctaccaacgttttctgtggtgctttatgtggtaaggaggaggaaagagaccatttattctttcaatg 34981871  T
Q  211 tgatttttatggtcaattatggct 234  Q
    ||||| ||||||||  ||||||||    
T  34981870 tgattattatggtcggttatggct 34981847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 20705483 - 20705694
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||    
T  20705483 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20705582  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||| |||||||| || || |||||||| || || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | |||||||||    
T  20705583 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgttt 20705682  T
Q  203 tttcaatgtgat 214  Q
    || |||||||||    
T  20705683 ttccaatgtgat 20705694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 20873527 - 20873738
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||    
T  20873527 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20873626  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||| |||||||| || || |||||||| || || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | |||||||||    
T  20873627 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgttt 20873726  T
Q  203 tttcaatgtgat 214  Q
    || |||||||||    
T  20873727 ttccaatgtgat 20873738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 22865766 - 22865847
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  22865766 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 22865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 47549050 - 47548969
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47549050 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 47553493 - 47553412
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47553493 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 27987585 - 27987669
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 114  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27987585 atcattttttgtggcataaagcggttccgttaaaggttaatatttttgtatggcgtctctttctgaatagacttgctacaaagga 27987669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 27869099 - 27869020
Alignment:
Q  35 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 114  Q
    ||||||||||| |||||||||   ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27869099 tttttatggctaaaagcggttatgttaaaggttaacatatttgtttggcgtctctttctgaatagacttgctacaaagga 27869020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 18815411 - 18815516
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 129  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||| || ||  | |||||    
T  18815411 atcattttttgtggcataaagcggttccgttaaaggttaatatatttgtctagcgtctctttctgaatagacttgctacaaaggataatctgaggaagag 18815510  T
Q  130 gaatgt 135  Q
    ||||||    
T  18815511 gaatgt 18815516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 8457213 - 8457286
Alignment:
Q  41 tggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 114  Q
    |||| |||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  8457213 tggcataaagcggtttcgttaaaggttaatatttttgtctggcgtctctttctgaatagacttgatacaaagga 8457286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 5196834 - 5196753
Alignment:
Q  33 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 114  Q
    ||||||| |||||||| ||| || | |||||||| || || ||| | || || |||||||| ||||||||||||||||||||    
T  5196834 aatttttgtggcttaaggcgatttcgttaaaagtgaatatctttatctgacgactctttctaaatagacttgctacaaagga 5196753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 11266256 - 11266021
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  11266256 tggacaacaacatcactgcagagtttggtcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcgtctctttctgaatagact 11266157  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  11266156 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctactaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 11266057  T
Q  203 tttcaatgtgatttttatggtcaattatggctcttg 238  Q
    ||||||||||| | ||||||||  ||||||||||||    
T  11266056 tttcaatgtgactattatggtcggttatggctcttg 11266021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 27891923 - 27891694
Alignment:
Q  9 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 108  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||| ||    
T  27891923 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtctggcatctctttctgaatagacttgcaac 27891824  T
Q  109 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 208  Q
    |||||||||||| ||||||||||| |||||||||| | |  ||   ||||| |||||||||||||||||||||||||||||  | |||||||||||||||    
T  27891823 aaaggacaacctgcgcaagaggaacgtccttcaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaa 27891724  T
Q  209 tgtgatttttatggtcaattatggctcttg 238  Q
    ||||||  |||||||| |||||||||||||    
T  27891723 tgtgatcattatggtcgattatggctcttg 27891694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 5824972 - 5825180
Alignment:
Q  15 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 114  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  5824972 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 5825071  T
Q  115 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 214  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||||| |||||||    
T  5825072 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgttttttcgatgtgat 5825171  T
Q  215 ttttatggt 223  Q
    | |||||||    
T  5825172 tattatggt 5825180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 6678577 - 6678798
Alignment:
Q  11 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  || |||||||||||| | |||||||||||| ||||||||||||    
T  6678577 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttagaag--aatatttttgtttggaggctctttctgaatcgacttgctacaa 6678674  T
Q  111 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || | ||||||||||||||||||  |||||||||||||||||||    
T  6678675 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatatggtaaggaggaggaaagtgatcatttgttttttcaatg 6678774  T
Q  211 tgatttttatggtcaattatggct 234  Q
    ||||| ||||||||  ||||||||    
T  6678775 tgattattatggtcggttatggct 6678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 29150504 - 29150301
Alignment:
Q  34 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaat 133  Q
    ||||||||||||||| |||||||| ||||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||||| | ||||| ||||||    
T  29150504 atttttatggcttaaggcggttccgttaaaggttaatatttttgtttggtgtcttttcctgaatagacttgctacaaaggacaacttgcgcaaaaggaat 29150405  T
Q  134 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggc 233  Q
    |||| | ||||||   ||   |||||||||||||| ||||||||||| ||||||||| | ||||| ||||||||||||||   |||||| |  |||||||    
T  29150404 gtcc-tgaggctaacaatgtatcttgtgcggccttctgtggtaaggacgaggaaagagaccatttattttttcaatgtgaccattatggccggttatggc 29150306  T
Q  234 tcttg 238  Q
    |||||    
T  29150305 tcttg 29150301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 29322997 - 29322916
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  29322997 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 29322916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 31962686 - 31962774
Alignment:
Q  26 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 114  Q
    |||| ||||||||||||||| |||| |||||| ||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  31962686 tttgctcaatttttatggctaaaagtggttccgttaaaggttaacatatttgtttggcatctctatctgaatagacttgctacaaagga 31962774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 38931973 - 38931892
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | |||||||||||  | || |||||||| |||||||||| |||||||||||||||||||||||||||    
T  38931973 atcaatttttatggttgaaagcggttccgctgaaggttaacatatttgtttggcatctctttctgaatagacttgctacaaa 38931892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 8896447 - 8896369
Alignment:
Q  33 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    ||||||||||| | ||||||||||  || || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  8896447 aatttttatggttgaaagcggttctgttgaaggttaacatagttgtttggcgtctctttctgaatagacttgctacaaa 8896369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 10462244 - 10462359
Alignment:
Q  119 cttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattttt 218  Q
    ||||||||||||||||||||  |||||||  ||  || |||||  || || ||| ||||||||||||||||  ||||||||||||| |||||||||| ||    
T  10462244 cttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtagtaaggaggaggaaagggatcatttgtttttccaatgtgattatt 10462343  T
Q  219 atggtcaattatggct 234  Q
    ||||||  ||||||||    
T  10462344 atggtcggttatggct 10462359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 38938684 - 38938468
Alignment:
Q  22 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaacctt 121  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  38938684 agagtttgatcagtttttatggcttaaagcggttcccttaaaaattaacatttttgtttggcgtctctttctgaatagacttactacaaaggacaatctt 38938585  T
Q  122 cgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatg 221  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||||||| |||||    
T  38938584 cgcaagaggaatgtctttcaggctacatatgcttcttgtgcggccttatgtggtaaggaggaggaaagggaccatttattttttcaatgtgattattatg 38938485  T
Q  222 gtcaattatggctcttg 238  Q
    ||| |||||| ||||||    
T  38938484 gtcgattatgactcttg 38938468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 30276109 - 30275892
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||    
T  30276109 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggaggctctttctgaatagactcgctacaaagg 30276010  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||| ||||||||||||| ||||||||    
T  30276009 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagagatcatttgtttttccaatgtga 30275910  T
Q  214 tttttatggtcaattatg 231  Q
    || |||||||| ||||||    
T  30275909 ttattatggtcgattatg 30275892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 32350097 - 32349874
Alignment:
Q  11 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 110  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | | |||||||||||||||||||||||||    
T  32350097 aatatcactgcagattttgatcaatttttatggcttaaagcgattcccttaaaagttaatatttttgtttcgtggctctttctgaatagacttgctacaa 32349998  T
Q  111 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    |||| |  ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||||    
T  32349997 aggatattcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 32349898  T
Q  211 tgatttttatggtcaattatggct 234  Q
     |||| |||||||| |||||||||    
T  32349897 cgattattatggtcgattatggct 32349874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 23385066 - 23384854
Alignment:
Q  11 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  23385066 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcggctctttctgaatagacatgctacaa 23384967  T
Q  111 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  |||||||||| || |||||    
T  23384966 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagtgatcatttgttcttccaatg 23384867  T
Q  211 tgatttttatggt 223  Q
    ||||| |||||||    
T  23384866 tgattattatggt 23384854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 21963627 - 21963419
Alignment:
Q  15 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 114  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21963627 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21963528  T
Q  115 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 214  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||||||   ||||||||||||||| |||||||    
T  21963527 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaaaggatcatttgttttttcgatgtgat 21963428  T
Q  215 ttttatggt 223  Q
    | |||||||    
T  21963427 tattatggt 21963419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 21964812 - 21964639
Alignment:
Q  15 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 114  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21964812 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21964713  T
Q  115 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaa 188  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||||||    
T  21964712 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaa 21964639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 234
Target Start/End: Original strand, 27914653 - 27914823
Alignment:
Q  64 agttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcg 163  Q
    |||||| ||||||||||| ||  |||||||||||||||||||||||||||| || ||||||||||||||||||||  |||||||  ||  || || ||      
T  27914653 agttaatatttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttatggt 27914752  T
Q  164 gccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 234  Q
    ||  | ||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||  ||||||||    
T  27914753 gctatatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 27914823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 1258665 - 1258584
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||||||||| || || |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  1258665 atcaatttttatggttaaaagcggttccgttgaaggttaacatatttgttttgcgtctctttctgaatagacttgctacaaa 1258584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 22300966 - 22300858
Alignment:
Q  31 tcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagagg 130  Q
    ||||||||||||| | |||| |||||| || || |||||||| |||||  | ||||||||||||||||||| |||||||||||| ||  | ||||| ||     
T  22300966 tcaatttttatggttaaaagtggttccgttgaaggttaacatatttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaaga 22300867  T
Q  131 aatgtcctt 139  Q
    |||||||||    
T  22300866 aatgtcctt 22300858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 667496 - 667285
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  667496 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagtggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 667397  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||  |||||||||          |||||||||||||||||  |  ||||||||    
T  667396 tgctacaaaggacaaccttcgcaagaggaatgtacttgaggctacaaatgtttcttgtgc----------ggtaaggaggaggaaagggactatttgttt 667307  T
Q  203 tttcaatgtgatttttatggtc 224  Q
    ||||||||||| | ||||||||    
T  667306 tttcaatgtgactattatggtc 667285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 18295398 - 18295618
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  18295398 atcactgcatattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 18295497  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    | || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  18295498 ataatcttcgcaagaggaatgttctagaggttaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 18295597  T
Q  214 tttttatggtcaattatggct 234  Q
    || |||||||| |||||||||    
T  18295598 ttattatggtcgattatggct 18295618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 28604878 - 28605113
Alignment:
Q  3 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 102  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  28604878 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 28604977  T
Q  103 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    ||| |||||||||||||| || |||||||| || ||| ||| | |  ||   ||||| |||||||||||||||||||||||||||||| | |||||||||    
T  28604978 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagagaccatttgttt 28605077  T
Q  203 tttcaatgtgatttttatggtcaattatggctcttg 238  Q
    || |||||||||  ||||||||  ||||||||||||    
T  28605078 ttccaatgtgatcattatggtcggttatggctcttg 28605113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 2894457 - 2894261
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||    
T  2894457 atcactgcagattttgatcaatttctatggcttaaagcggttcccttaaaagttaatatttttgtttggcggctttttctgaatagacttgctacaaagg 2894358  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    | || ||||| ||||||||| ||||| |||| ||  ||  ||||||||  || || |||||||| |||||||| |   ||||||||||||| |||||    
T  2894357 ataatcttcgtaagaggaatatccttgaggcaaccaatgtttcttgtggtgctttatgtggtaacgaggaggacatggatcatttgtttttccaatg 2894261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 7218368 - 7218552
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 129  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||  | || || ||    
T  7218368 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaag 7218467  T
Q  130 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 214  Q
    ||||||| || ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||    
T  7218468 gaatgtctttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgat 7218552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 17228156 - 17228031
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||| ||||||| |||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||    
T  17228156 atcactgaagagtttcatcattttttgtggcttaaagcagttccgttaaatgtgaacatatttgtctggcgtctctttctaaatagacttgctacaaagg 17228057  T
Q  114 acaaccttcgcaagaggaatgtcctt 139  Q
    ||||  | ||||| ||||||||||||    
T  17228056 acaatttgcgcaaaaggaatgtcctt 17228031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 5391535 - 5391616
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||||| ||| || || ||||||||||||||||||||  | ||||||||||||||||| |||||    
T  5391535 atcaatttttatggttgaaagcggctccgttgaaggttaacatttttgtttggcgcttatttctgaatagacttgcaacaaa 5391616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 9759578 - 9759701
Alignment:
Q  87 tctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggagga 186  Q
    |||||| ||||||||||||||||||||| || || ||||| ||||||||| || |||| ||   |   | ||||||||| ||| ||||||||||||| ||    
T  9759578 tctttccgaatagacttgctacaaaggataatctgcgcaaaaggaatgtctttgaggccacttttgtgtattgtgcggctttgcgtggtaaggaggatga 9759677  T
Q  187 aagatatcatttgttttttcaatg 210  Q
    |||  | ||| |||||||||||||    
T  9759678 aagggaccatctgttttttcaatg 9759701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 26077728 - 26077948
Alignment:
Q  14 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 113  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  26077728 atcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 26077827  T
Q  114 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 213  Q
    |||| |||||||| |||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  26077828 acaatcttcgcaaaaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 26077927  T
Q  214 tttttatggtcaattatggct 234  Q
     | ||||||||  ||||||||    
T  26077928 atattatggtcgcttatggct 26077948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 31423238 - 31423431
Alignment:
Q  9 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 108  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||    
T  31423238 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaatatttttgtctgacgtctctttctgaatagacttgcaac 31423337  T
Q  109 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 202  Q
    |||| ||||||||||||||||||| |||||| | | |||  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  31423338 aaagaacaaccttcgcaagaggaacgtccttgaaggtaccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 31423431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 29532561 - 29532381
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 129  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  |  |||| ||    
T  29532561 atcaatttttatggcttaaagcggtaccattaaatgttaacatttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaag 29532462  T
Q  130 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 210  Q
    |||||||||||  ||||   |||  ||||||| ||||||||||| |||||||||||||||  |||||||||| ||||||||    
T  29532461 gaatgtccttccagctaataatatatcttgtgtggccttgtgtgataaggaggaggaaagggatcatttgttctttcaatg 29532381  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 26390260 - 26390454
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 129  Q
    ||||||||||||||||||  ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||  |  |||  ||    
T  26390260 atcaatttttatggcttacggcggtaccattaaaggttaacatttttgtctggcgtctctttctgaatagacttgctacaacggacaatttaagcataag 26390359  T
Q  130 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtc 224  Q
    ||||||||||| |||||   |||  |||| |  ||||||||||||||||||||| |||||    |||||||| |||||||| |||  ||||||||    
T  26390360 gaatgtccttccggctaataatatgtcttatatggccttgtgtggtaaggaggacgaaaggggccatttgttctttcaatgcgatcattatggtc 26390454  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 10801698 - 10801779
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 111  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10801698 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 10801779  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 2959748 - 2959812
Alignment:
Q  170 tgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 234  Q
    ||||||||||||||||| ||| | ||||| || ||||||||||||| ||||||||  ||||||||    
T  2959748 tgtggtaaggaggaggacagagaccatttattctttcaatgtgattattatggtcggttatggct 2959812  T

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Target: scaffold0003 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 224744 - 224928
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 129  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  | || || ||    
T  224744 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaag 224843  T
Q  130 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 214  Q
    |||||||||| ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||    
T  224844 gaatgtccttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgat 224928  T

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Target: scaffold0289 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 11269 - 11164
Alignment:
Q  30 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 129  Q
    |||| ||||| ||||  |||| |||||| ||||| ||||| || ||||| ||  ||||||| |||||||||||| |||||||||| || || || |||||    
T  11269 atcattttttgtggcacaaagaggttccgttaaaggttaatatatttgtatgatgtctcttcctgaatagactttctacaaaggataatctgcggaagag 11170  T
Q  130 gaatgt 135  Q
     |||||    
T  11169 aaatgt 11164  T

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