View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_260 (Length: 238)
Name: NF8180A_low_260
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_260 |
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Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 4048397 - 4048477
Alignment:
| Q |
6 |
aacagagataactagtgaagagaacaaagaaagtaataatattttctttcttctaattggcttgcgtctgatttcaggtaa |
86 |
Q |
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| T |
4048397 |
aacaaagataactagtgaagaaaacaaagaaagtaataatattttctttcttctaattggcttgcgtctgatttcaggtaa |
4048477 |
T |
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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 4048649 - 4048731
Alignment:
| Q |
89 |
atgtttgttgttctcattcatcatttgattaaaa-caaactaagattggacataatttccccttctcctatatattattatta |
170 |
Q |
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| T |
4048649 |
atgtttgttgttctcattcatcatttgattaaaaacaaactaagattggacataatttccccttctcctgcatattattatta |
4048731 |
T |
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