View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_261 (Length: 238)

Name: NF8180A_low_261
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_261
NF8180A_low_261
[»] chr1 (1 HSPs)
chr1 (80-224)||(16652507-16652651)
[»] scaffold0029 (1 HSPs)
scaffold0029 (80-224)||(131858-132002)
[»] scaffold0002 (1 HSPs)
scaffold0002 (80-224)||(309675-309819)
[»] chr2 (1 HSPs)
chr2 (80-224)||(21415250-21415394)
[»] scaffold0583 (1 HSPs)
scaffold0583 (145-224)||(8522-8601)
[»] chr7 (1 HSPs)
chr7 (145-224)||(45118115-45118194)
[»] chr4 (2 HSPs)
chr4 (166-224)||(49714227-49714285)
chr4 (186-218)||(49714199-49714231)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 16652651 - 16652507
Alignment:
Q  80 tattgacacaaatatacgtgnnnnnnnctttttaaacacatcgtaaatagtaaaatataaaggatggtgtacccatggtaatccaactcaataggagtca 179  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  16652651 tattgacacaaatatacgtgaaaaaaactttttaaacacatcgtaaatagtaaaatataaaggatggtgtacccattgtaatccaactcaataggaatca 16652552  T
Q  180 tcttcgattgagatccattccgagtatatgacttctcaacaccaa 224  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  16652551 tcttcgattgagatccattgcaagtatatgacttctcaacaccaa 16652507  T

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Target: scaffold0029 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 132002 - 131858
Alignment:
Q  80 tattgacacaaatatacgtgnnnnnnnctttttaaacacatcgtaaatagtaaaatataaaggatggtgtacccatggtaatccaactcaataggagtca 179  Q
    ||||||||||||||||||||       |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  132002 tattgacacaaatatacgtgaaaaaaactttttaaacacatcgtaaataataaaatataaaggatggtgtacccatcgtaatccaactcaataggaatca 131903  T
Q  180 tcttcgattgagatccattccgagtatatgacttctcaacaccaa 224  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||    
T  131902 tcttcgattgagatcgattgcgagtatatgacttctcaacaccaa 131858  T

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Target: scaffold0002 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 309819 - 309675
Alignment:
Q  80 tattgacacaaatatacgtgnnnnnnnctttttaaacacatcgtaaatagtaaaatataaaggatggtgtacccatggtaatccaactcaataggagtca 179  Q
    ||||||||||||||||||||       |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  309819 tattgacacaaatatacgtgaaaaaaactttttaaacacatcgtaaataataaaatataaaggatggtgtacccatcgtaatccaactcaataggaatca 309720  T
Q  180 tcttcgattgagatccattccgagtatatgacttctcaacaccaa 224  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||    
T  309719 tcttcgattgagatcgattgcgagtatatgacttctcaacaccaa 309675  T

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Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 21415250 - 21415394
Alignment:
Q  80 tattgacacaaatatacgtgnnnnnnnctttttaaacacatcgtaaatagtaaaatataaaggatggtgtacccatggtaatccaactcaataggagtca 179  Q
    ||||||||||||||||||||       |||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  21415250 tattgacacaaatatacgtgaaaaaaactttttaaacacatggtaaataataaaatataaaggatggtgtacccatcgtaatccaactcaataggaatca 21415349  T
Q  180 tcttcgattgagatccattccgagtatatgacttctcaacaccaa 224  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  21415350 tcttcgattgagatccattgcgagtatatgacttctcaacaccaa 21415394  T

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Target: scaffold0583 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 8601 - 8522
Alignment:
Q  145 ggtgtacccatggtaatccaactcaataggagtcatcttcgattgagatccattccgagtatatgacttctcaacaccaa 224  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  8601 ggtgtacccatcgtaatccaactcaatagaaatcatcttcgattgagatccattgcgagtatatgacttttcaacaccaa 8522  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 45118194 - 45118115
Alignment:
Q  145 ggtgtacccatggtaatccaactcaataggagtcatcttcgattgagatccattccgagtatatgacttctcaacaccaa 224  Q
    ||||||||||| ||||| ||||||||||| | ||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  45118194 ggtgtacccatcgtaatacaactcaatagaaatcatctttgattgagatccattgcgagtatatgacttttcaacaccaa 45118115  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 49714227 - 49714285
Alignment:
Q  166 ctcaataggagtcatcttcgattgagatccattccgagtatatgacttctcaacaccaa 224  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  49714227 ctcaataggaatcatcttcgattgagatccattgcgagtatatgacttctcaacaccaa 49714285  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 49714199 - 49714231
Alignment:
Q  186 attgagatccattccgagtatatgacttctcaa 218  Q
    ||||||||||||| |||||||||||||||||||    
T  49714199 attgagatccattgcgagtatatgacttctcaa 49714231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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