View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_262 (Length: 238)

Name: NF8180A_low_262
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_262
NF8180A_low_262
[»] scaffold0044 (1 HSPs)
scaffold0044 (20-220)||(58522-58722)
[»] chr6 (2 HSPs)
chr6 (148-215)||(15879868-15879935)
chr6 (149-215)||(27435974-27436040)
[»] chr4 (6 HSPs)
chr4 (149-220)||(34940923-34940994)
chr4 (149-215)||(13920131-13920197)
chr4 (149-211)||(36697933-36697995)
chr4 (148-211)||(6561150-6561213)
chr4 (152-215)||(14250355-14250418)
chr4 (161-215)||(33407635-33407689)
[»] scaffold0578 (1 HSPs)
scaffold0578 (148-220)||(2593-2665)
[»] chr2 (3 HSPs)
chr2 (148-220)||(5009012-5009084)
chr2 (149-220)||(16383835-16383906)
chr2 (63-111)||(34315126-34315174)
[»] scaffold0003 (1 HSPs)
scaffold0003 (149-215)||(51322-51388)
[»] chr5 (3 HSPs)
chr5 (148-212)||(22093696-22093760)
chr5 (149-192)||(13313081-13313124)
chr5 (148-179)||(40849293-40849324)
[»] scaffold0216 (1 HSPs)
scaffold0216 (148-192)||(29039-29083)
[»] chr8 (1 HSPs)
chr8 (155-215)||(17889356-17889416)
[»] chr1 (3 HSPs)
chr1 (149-220)||(24888440-24888511)
chr1 (149-179)||(18833830-18833860)
chr1 (154-214)||(29562225-29562285)
[»] chr3 (2 HSPs)
chr3 (152-215)||(20781579-20781642)
chr3 (151-220)||(38140734-38140803)
[»] scaffold0284 (1 HSPs)
scaffold0284 (149-179)||(6308-6338)


Alignment Details
Target: scaffold0044 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 58722 - 58522
Alignment:
Q  20 tagataattctagaagcattggaggcggcgcccatannnnnnncgccctagggcacttaggcccttctggagggcgccga-ggctcttttggagggacac 118  Q
    ||||| |||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  58722 tagattattctagaagcattagaggcggcgcccatagggggg-cgccctagggcacttaggcccttctggagggcgcccaaggctcttttggagggacac 58624  T
Q  119 cagtcctgagaagtatatttggcggtccaccatgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacacgtg 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||| |||||||||||||||||||||    
T  58623 cagtcctgagaagtatatttggcggtccaccatgtttttttcaagttttgaaaatttgttctcggaaatattatatttccagaaatgttatttacacgtg 58524  T
Q  219 at 220  Q
    ||    
T  58523 at 58522  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 15879868 - 15879935
Alignment:
Q  148 ccatgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacac 215  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||| ||| |||||||||||||||    
T  15879868 ccatgtttgtttcaagttttgaaaatttgttcccatgaatgttatattctcaaaaatgttatttacac 15879935  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 27436040 - 27435974
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacac 215  Q
    ||||||||||||||||||||||||||||||| |  |||| ||||||| | || ||||||||||||||    
T  27436040 catgtttgtttcaagttttgaaaatttgttcccatgaatattatattatgaggaatgttatttacac 27435974  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 34940923 - 34940994
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacacgtgat 220  Q
    ||||||||||||||||||| ||||||||||| | | ||| |||||||| |||||||||||||||||| ||||    
T  34940923 catgtttgtttcaagttttaaaaatttgttcccaacaatattatatttccagaaatgttatttacacatgat 34940994  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 13920131 - 13920197
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacac 215  Q
    ||||||||||||||||||||||||||||||  |  |||||||||||| ||| |||||||||||||||    
T  13920131 catgtttgtttcaagttttgaaaatttgttaccatgaatgttatattctcaaaaatgttatttacac 13920197  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 36697933 - 36697995
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttattt 211  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||  ||| ||||||||||    
T  36697933 catgtttgtttcaagttttgaaaatttgttctcatgaatgttatattcccaggaatgttattt 36697995  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 6561150 - 6561213
Alignment:
Q  148 ccatgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttattt 211  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||  ||| ||||||||||    
T  6561150 ccatgtttgtttcaagttttgaaaatttgttcccatgaatgttatattcccaggaatgttattt 6561213  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 14250355 - 14250418
Alignment:
Q  152 gtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacac 215  Q
    |||||||||||||||||||||||||||| |  |||| ||||||| | || ||||||||||||||    
T  14250355 gtttgtttcaagttttgaaaatttgttcccatgaatattatattatgaggaatgttatttacac 14250418  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 33407635 - 33407689
Alignment:
Q  161 aagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacac 215  Q
    ||||||||||||||||||| || |||||||||||||| |  ||||||||||||||    
T  33407635 aagttttgaaaatttgttcacgggaatgttatatttttaataatgttatttacac 33407689  T

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Target: scaffold0578 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 2593 - 2665
Alignment:
Q  148 ccatgtttgtttcaagttttgaaaatttgttctcga-gaatgttatattttcagaaatgttatttacacgtgat 220  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||  ||| |||||||||||||| ||||    
T  2593 ccatgtttgtttcaagttttgaaaatttgttc-cgaggaatgttatattcacaggaatgttatttacacatgat 2665  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 5009084 - 5009012
Alignment:
Q  148 ccatgtttgtttcaagttttgaaaatttgttctcga-gaatgttatattttcagaaatgttatttacacgtgat 220  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||  ||| |||||||||||||| ||||    
T  5009084 ccatgtttgtttcaagttttgaaaatttgttc-cgaggaatgttatattcacaggaatgttatttacacatgat 5009012  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 16383835 - 16383906
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacacgtgat 220  Q
    |||||| |||||||||||||||| ||||||| |  |||| |||||||| || ||||| ||||||||||||||    
T  16383835 catgttagtttcaagttttgaaagtttgttccccggaattttatatttccaaaaatgctatttacacgtgat 16383906  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 34315126 - 34315174
Alignment:
Q  63 cgccctagggcacttaggcccttctggagggcgccgaggctcttttgga 111  Q
    ||||||||||||||||||||||| ||||| ||| || ||| ||||||||    
T  34315126 cgccctagggcacttaggcccttttggagagcgtcggggcccttttgga 34315174  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 51322 - 51388
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacac 215  Q
    ||||||||||||||||||||||||||||||| |  |||| ||||||| | || ||||||||||||||    
T  51322 catgtttgtttcaagttttgaaaatttgttcccatgaatattatattatgaggaatgttatttacac 51388  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 22093696 - 22093760
Alignment:
Q  148 ccatgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttattta 212  Q
    |||||||| ||||||||||||||||||||||| |  |||||||||||| |||| |||||| ||||    
T  22093696 ccatgtttttttcaagttttgaaaatttgttcccatgaatgttatattctcaggaatgttgttta 22093760  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 13313124 - 13313081
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttctcgagaatgttat 192  Q
    ||||||||||||||||||||||||||||||| |  |||||||||    
T  13313124 catgtttgtttcaagttttgaaaatttgttcccatgaatgttat 13313081  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 179
Target Start/End: Complemental strand, 40849324 - 40849293
Alignment:
Q  148 ccatgtttgtttcaagttttgaaaatttgttc 179  Q
    ||||||||||||||||||||||||||||||||    
T  40849324 ccatgtttgtttcaagttttgaaaatttgttc 40849293  T

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Target: scaffold0216 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 29083 - 29039
Alignment:
Q  148 ccatgtttgtttcaagttttgaaaatttgttctcgagaatgttat 192  Q
    |||||||||||||||||||| |||||||||||||  |||||||||    
T  29083 ccatgtttgtttcaagttttaaaaatttgttctcatgaatgttat 29039  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 17889356 - 17889416
Alignment:
Q  155 tgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacac 215  Q
    ||||||||||||||||||||||||| |  |||| ||||||| | || ||||||||||||||    
T  17889356 tgtttcaagttttgaaaatttgttcccatgaatattatattatgaggaatgttatttacac 17889416  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 24888511 - 24888440
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttctcga-gaatgttatattttcagaaatgttatttacacgtgat 220  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||| |||  ||| |||||||||| ||||    
T  24888511 catgtttgttttaagttttgaaaatttgttc-cgaggaatgttatattctcatgaattttatttacacatgat 24888440  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 179
Target Start/End: Complemental strand, 18833860 - 18833830
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttc 179  Q
    |||||||||||||||||||||||||||||||    
T  18833860 catgtttgtttcaagttttgaaaatttgttc 18833830  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 29562225 - 29562285
Alignment:
Q  154 ttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttaca 214  Q
    |||||| ||||||  ||||||| ||||| ||||| ||||||||||  ||||||||||||||    
T  29562225 ttgtttgaagtttaaaaaatttattctcaagaattttatattttccaaaatgttatttaca 29562285  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 20781579 - 20781642
Alignment:
Q  152 gtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacac 215  Q
    |||||||||||||||| ||||||||||| |  |||| ||||||| | || ||||||||||||||    
T  20781579 gtttgtttcaagttttaaaaatttgttcccatgaatattatattatgaggaatgttatttacac 20781642  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 38140803 - 38140734
Alignment:
Q  151 tgtttgtttcaagttttgaaaatttgttctcgagaatgttatattttcagaaatgttatttacacgtgat 220  Q
    |||||||||||| |||||||||||||||||   |||||||||||| | |  ||| |||||||||| ||||    
T  38140803 tgtttgtttcaaattttgaaaatttgttctaaggaatgttatattcttatgaatcttatttacacatgat 38140734  T

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Target: scaffold0284 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 179
Target Start/End: Complemental strand, 6338 - 6308
Alignment:
Q  149 catgtttgtttcaagttttgaaaatttgttc 179  Q
    |||||||||||||||||||||||||||||||    
T  6338 catgtttgtttcaagttttgaaaatttgttc 6308  T

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