View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_269 (Length: 235)
Name: NF8180A_low_269
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_269 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 34008404 - 34008208
Alignment:
| Q |
16 |
agaagtttctggtgttgcattcttgcaaaagtgtctccataactgacgaattcatgaagatattttcatgtattgctaccttcatggaattggtagaggt |
115 |
Q |
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| T |
34008404 |
agaagtttctggtgttgcattcttgcaaaagtgtctccataactgacgaattcatgaagatattttcatgtattgctaccttcatggaattggtagtggt |
34008305 |
T |
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| Q |
116 |
gtttctttgttggtagataaagtgttttgtaagtggtgccctgtgtacatctattgttgaaatgctgcttttatcatgattttggtatcatttctat |
212 |
Q |
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| T |
34008304 |
gtttctttgttggtagatagagtgttttgtaagtggtgccatgtatacatctattgttgaaatggtgcttttatcatgattttggtatcatttctat |
34008208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 30051361 - 30051257
Alignment:
| Q |
105 |
ttggtagaggtgtttctttgttggtagataaagtgttttgtaagtggtgccctgtgtacatctattgttgaaatgctgc-ttttatcatgattttggtat |
203 |
Q |
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| T |
30051361 |
ttggtagtggtgtttctttgttgaccgatagagtgttttgtaagtggtgcaatgagtacatcttttgttataatggtgctttttatcatgattttggtgt |
30051262 |
T |
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| Q |
204 |
cattt |
208 |
Q |
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| T |
30051261 |
cattt |
30051257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 30142405 - 30142301
Alignment:
| Q |
105 |
ttggtagaggtgtttctttgttggtagataaagtgttttgtaagtggtgccctgtgtacatctattgttgaaatgctgc-ttttatcatgattttggtat |
203 |
Q |
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| T |
30142405 |
ttggtagtggtgtttctttgttgaccgatagagtgttttgtaagtggtgcaatgagtacatcttttgttataatggtgctttttatcatgattttggtgt |
30142306 |
T |
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| Q |
204 |
cattt |
208 |
Q |
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||||| |
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| T |
30142305 |
cattt |
30142301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 30051507 - 30051416
Alignment:
| Q |
16 |
agaagtttctggtgttgcattctt-gcaaaagtgtctccataactgacgaattcatgaagatattttcatgtattgctaccttcatggaattg |
107 |
Q |
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| T |
30051507 |
agaagttgctggtgttg-attctttgcataagtgtctccataattggcgagttcatgaagagattttcgtagattgttaccttcatggaattg |
30051416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 30142551 - 30142460
Alignment:
| Q |
16 |
agaagtttctggtgttgcattctt-gcaaaagtgtctccataactgacgaattcatgaagatattttcatgtattgctaccttcatggaattg |
107 |
Q |
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| T |
30142551 |
agaagttgctggtgttg-attctttgcataagtgtctccataattggcgagttcatgaagagattttcgtagattgttaccttcatggaattg |
30142460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 30243721 - 30243630
Alignment:
| Q |
16 |
agaagtttctggtgttgcattctt-gcaaaagtgtctccataactgacgaattcatgaagatattttcatgtattgctaccttcatggaattg |
107 |
Q |
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| T |
30243721 |
agaagttgctggtgttg-attctttgcataagtgtctccataattggcgagttcatgaagagattttcgtagattgttaccttcatggaattg |
30243630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 30089522 - 30089435
Alignment:
| Q |
16 |
agaagtttctggtgttgcattctt-gcaaaagtgtctccataactgacgaattcatgaagatattttcatgtattgctaccttcatgga |
103 |
Q |
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| T |
30089522 |
agaagttgctggtgttg-attctttgcataagtgtctccataattggcgagttcatgaagagattttcgtagattgttaccttcatgga |
30089435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 30126126 - 30126039
Alignment:
| Q |
16 |
agaagtttctggtgttgcattctt-gcaaaagtgtctccataactgacgaattcatgaagatattttcatgtattgctaccttcatgga |
103 |
Q |
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| T |
30126126 |
agaagttgctggtgttg-attctttgcataagtgtctccataattggcgagttcatgaagagattttcgtagattgttaccttcatgga |
30126039 |
T |
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