View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_27 (Length: 420)

Name: NF8180A_low_27
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_27
NF8180A_low_27
[»] chr4 (3 HSPs)
chr4 (14-264)||(16865251-16865505)
chr4 (284-418)||(16865563-16865697)
chr4 (305-371)||(5877096-5877162)
[»] chr8 (4 HSPs)
chr8 (14-260)||(40610865-40611111)
chr8 (287-413)||(40610673-40610800)
chr8 (49-158)||(7850088-7850197)
chr8 (305-369)||(7849839-7849903)
[»] chr3 (3 HSPs)
chr3 (14-264)||(20544211-20544460)
chr3 (289-413)||(20544523-20544648)
chr3 (122-158)||(608514-608550)
[»] chr6 (2 HSPs)
chr6 (290-420)||(5144906-5145037)
chr6 (19-266)||(5145099-5145345)
[»] chr7 (5 HSPs)
chr7 (283-407)||(3013095-3013220)
chr7 (47-158)||(3013272-3013383)
chr7 (305-369)||(46431583-46431647)
chr7 (305-371)||(11850400-11850466)
chr7 (49-158)||(46431832-46431940)
[»] chr5 (2 HSPs)
chr5 (284-419)||(20531210-20531346)
chr5 (47-158)||(20530905-20531016)
[»] chr1 (1 HSPs)
chr1 (291-403)||(47143841-47143954)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 16865251 - 16865505
Alignment:
Q  14 agataggagttaagtggatatatacaacaaagatgaatgaaaaaggggaaattgaaaagtacaaagccagattggttgctaatggatatgctcagaaact 113  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  16865251 agataggagttaagtggatatataaaactaagctgaatgaaaaaagggaaattgaaaagtacaaagccagattggttgctaatggatatgctccgtaact 16865350  T
Q  114 tggggttgactataatgaagtgtttgcaccagtagcaagatgggaagctgtcagaacaatcctacc----agttgcagcttgtaaaggatggaaagttta 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||| |||||    ||||||| ||||||||||||||||||||||    
T  16865351 tggggttgactataatgaagtgtttgcaccagtagcaagatgggaaaccatcagaacaattctaccagttagttgcaacttgtaaaggatggaaagttta 16865450  T
Q  210 tcatcttgatgttaagagtgattttatgcatggtgagttaattgaagatgtgtat 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16865451 tcatcttgatgttaagagtgattttatgcatggtgagttaattgaatatgtgtat 16865505  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 284 - 418
Target Start/End: Original strand, 16865563 - 16865697
Alignment:
Q  284 aaagctttgtatggattaagtcaggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgttctatgaacatac 383  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16865563 aaagctttgtatgtattaagtcaggcacctaaagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgttctatgaacatac 16865662  T
Q  384 cttatttgtgaagaacaactctgatggaaggatgc 418  Q
    |||||||||||||||||||||||||||||||||||    
T  16865663 cttatttgtgaagaacaactctgatggaaggatgc 16865697  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 5877096 - 5877162
Alignment:
Q  305 caggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgtt 371  Q
    |||||||| ||||||||||||||||| |||||| | ||||||| || ||||  |||||| |||||||    
T  5877096 caggcaccaagagcatggtatagcaagatagaagcatactttgttcgagaaggttttgaaaaatgtt 5877162  T

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Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 40611111 - 40610865
Alignment:
Q  14 agataggagttaagtggatatatacaacaaagatgaatgaaaaaggggaaattgaaaagtacaaagccagattggttgctaatggatatgctcagaaact 113  Q
    ||||||||||||| ||||| || | ||  ||| |||||||||||||||||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||    
T  40611111 agataggagttaaatggatttacaaaagtaagctgaatgaaaaaggggaaattgagaagcacaaaaccatattggttgctaagggatatgctcagaagct 40611012  T
Q  114 tggggttgactataatgaagtgtttgcaccagtagcaagatgggaagctgtcagaacaatcctaccagttgcagcttgtaaaggatggaaagtttatcat 213  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||  |  |||||||  | ||| ||||||||||||| |||||||||||||| |||||     
T  40611011 tggagttgactacaatgaagtgtttgcaccagtagcaagatgggacaccatcagaactcttctagcagttgcagcttgcaaaggatggaaagtgtatcag 40610912  T
Q  214 cttgatgttaagagtgattttatgcatggtgagttaattgaagatgt 260  Q
    |||||||| ||||||| |||| ||||||| |||||||||||||||||    
T  40610911 cttgatgtcaagagtgcttttctgcatggagagttaattgaagatgt 40610865  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 287 - 413
Target Start/End: Complemental strand, 40610800 - 40610673
Alignment:
Q  287 gctttgtatggattaagtcaggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgttc-tatgaacatacct 385  Q
    ||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||| |||||||||||||||||||| |||  |||||||||| |    
T  40610800 gctttgtatggattaagacaggcacctagagcatggtacagtaaaatagaatcctactttgctcaagaaaattttgagaaatattcacatgaacatactt 40610701  T
Q  386 tatttgtgaagaacaactctgatggaag 413  Q
    |||||||||| || ||||||||||||||    
T  40610700 tatttgtgaaaaataactctgatggaag 40610673  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 7850197 - 7850088
Alignment:
Q  49 aatgaaaaaggggaaattgaaaagtacaaagccagattggttgctaatggatatgctcagaaacttggggttgactataatgaagtgtttgcaccagtag 148  Q
    ||||||||||| ||| | ||||| |||||||| ||  |||| ||||| |||||| ||||| |   |||  |||||||||||||||| ||||||||||| |    
T  7850197 aatgaaaaaggagaagtagaaaaatacaaagctaggctggtagctaaaggatattctcagcagtatggtattgactataatgaagtttttgcaccagtgg 7850098  T
Q  149 caagatggga 158  Q
    ||||||||||    
T  7850097 caagatggga 7850088  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 7849903 - 7849839
Alignment:
Q  305 caggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatg 369  Q
    |||||||||||||| |||||||| ||||||||| |||| ||  |  ||||||||||||| |||||    
T  7849903 caggcacctagagcctggtatagtaaaatagaagcttatttctgcaaagaaaattttgaaaaatg 7849839  T

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Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 20544211 - 20544460
Alignment:
Q  14 agataggagttaagtggatatatacaacaaagatgaatgaaaaaggggaaattgaaaagtacaaagccagattggttgctaatggatatgctcagaaact 113  Q
    ||||||||||||| ||||| || | ||| ||| |||| |||||||||||| || | ||| |||||||||||||||||||||| ||||||||||| || ||    
T  20544211 agataggagttaaatggatttacaaaactaagctgaacgaaaaaggggaattt-agaagcacaaagccagattggttgctaagggatatgctcaaaagct 20544309  T
Q  114 tggggttgactataatgaagtgtttgcaccagtagcaagatgggaagctgtcagaacaatcctaccagttgcagcttgtaaaggatggaaagtttatcat 213  Q
    |||  ||||||| ||||||||||||||||||||||||||||||||  |  |||||||  | ||| || |||||||||| ||||| ||||| || |||||     
T  20544310 tggatttgactacaatgaagtgtttgcaccagtagcaagatgggacaccatcagaactcttctagcaattgcagcttgcaaaggttggaacgtgtatcag 20544409  T
Q  214 cttgatgttaagagtgattttatgcatggtgagttaattgaagatgtgtat 264  Q
    |||||||| ||||||| |||| ||||||| |||||||||||||||||||||    
T  20544410 cttgatgtcaagagtgcttttctgcatggagagttaattgaagatgtgtat 20544460  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 289 - 413
Target Start/End: Original strand, 20544523 - 20544648
Alignment:
Q  289 tttgtatggattaagtcaggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgttc-tatgaacatacctta 387  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||  |||||||||| |||    
T  20544523 tttgtatggattaagacaggcaccaagagcatggtatagtaaaataaaatcctactttgctcaagaaaattttgagaaatgttcacatgaacatacttta 20544622  T
Q  388 tttgtgaagaacaactctgatggaag 413  Q
    |||||||| |||| ||||||||||||    
T  20544623 tttgtgaaaaacatctctgatggaag 20544648  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 608514 - 608550
Alignment:
Q  122 actataatgaagtgtttgcaccagtagcaagatggga 158  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  608514 actataatgaagtgtttgctccagttgcaagatggga 608550  T

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Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 290 - 420
Target Start/End: Complemental strand, 5145037 - 5144906
Alignment:
Q  290 ttgtatggattaagtcaggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgttct-atgaacataccttat 388  Q
    |||||||||| ||  |||||||||| ||||||||||||||||||||||||||| |||| | ||||||| |||| |||||||||| |||||||||| ||||    
T  5145037 ttgtatggatgaaaacaggcacctaaagcatggtatagcaaaatagaatcttattttgcttaagaaaactttgtgaaatgttctcatgaacatactttat 5144938  T
Q  389 ttgtgaagaacaactctgatggaaggatgctt 420  Q
    ||||||||||||||||||| ||||| ||||||    
T  5144937 ttgtgaagaacaactctgaaggaagaatgctt 5144906  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 5145345 - 5145099
Alignment:
Q  19 ggagttaagtggatatatacaacaaagatgaatgaaaaaggggaaattgaaaagtacaaagccagattggttgctaatggatatgctcagaaacttgggg 118  Q
    |||||||| ||| ||||||  || ||| ||||| || |||||||  |||| ||||||||||| ||||| || ||||| ||||||||||| || ||  |      
T  5145345 ggagttaaatgggtatataagactaagctgaat-aagaaggggagtttgagaagtacaaagctagattagtagctaagggatatgctcaaaagctcagaa 5145247  T
Q  119 ttgactataatgaagtgtttgcaccagtagcaagatgggaagctgtcagaacaatcctaccagttgcagcttgtaaaggatggaaagtttatcatcttga 218  Q
    || |||| |||||||| ||||||||  ||||||||||||| ||  | ||||||||  || || ||||||| |||||||| ||||| |||||||| |||||    
T  5145246 ttaactacaatgaagtatttgcacctatagcaagatgggacgccataagaacaattttagcaattgcagcatgtaaaggttggaaggtttatcagcttga 5145147  T
Q  219 tgttaagagtgattttatgcatggtgagttaattgaagatgtgtatct 266  Q
    |||||| | ||| ||| | ||||||||| ||||||||| ||| |||||    
T  5145146 tgttaaaaatgagtttcttcatggtgagctaattgaagttgtatatct 5145099  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 283 - 407
Target Start/End: Complemental strand, 3013220 - 3013095
Alignment:
Q  283 aaaagctttgtatggattaagtcaggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgttct-atgaacat 381  Q
    ||||||||||||||||||||| |||||||||||||  |||||||| || |||||||||||||||| ||||||||||||   |||||| ||| ||||||||    
T  3013220 aaaagctttgtatggattaagacaggcacctagagtgtggtatagtaagatagaatcttactttgctcaagaaaatttcatgaaatgctctcatgaacat 3013121  T
Q  382 accttatttgtgaagaacaactctga 407  Q
    ||||| ||||||||||| ||||||||    
T  3013120 accttgtttgtgaagaataactctga 3013095  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 3013383 - 3013272
Alignment:
Q  47 tgaatgaaaaaggggaaattgaaaagtacaaagccagattggttgctaatggatatgctcagaaacttggggttgactataatgaagtgtttgcaccagt 146  Q
    ||||||| ||||| ||  |||| || |||||||| ||||| || ||||| |||||||||||||| |||||| |||| || | |||||||||| |||| ||    
T  3013383 tgaatgagaaaggagaggttgagaaatacaaagctagattagtagctaagggatatgctcagaagcttgggattgattacagtgaagtgtttccacctgt 3013284  T
Q  147 agcaagatggga 158  Q
     |||||||||||    
T  3013283 ggcaagatggga 3013272  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 46431647 - 46431583
Alignment:
Q  305 caggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatg 369  Q
    |||||||| |||||||||||||| ||||||||| |||||||  |  |||| ||||||||||||||    
T  46431647 caggcaccaagagcatggtatagtaaaatagaagcttacttctgcaaagagaattttgagaaatg 46431583  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 11850400 - 11850466
Alignment:
Q  305 caggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgtt 371  Q
    |||||||| ||||||||||||||||| |||||| | ||||||| || ||||  |||||| |||||||    
T  11850400 caggcaccaagagcatggtatagcaagatagaagcatactttgttcgagaaggttttgaaaaatgtt 11850466  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 46431940 - 46431832
Alignment:
Q  49 aatgaaaaaggggaaattgaaaagtacaaagccagattggttgctaatggatatgctcagaaacttggggttgactataatgaagtgtttgcaccagtag 148  Q
    |||||||| || ||||| || || || |||||||| ||| | ||||| |||||| ||||| ||  |||  |||||||||||||||| |||| |||||| |    
T  46431940 aatgaaaagggagaaatagagaaatataaagccaggttg-tagctaaaggatattctcagcaatatggtattgactataatgaagtctttgtaccagttg 46431842  T
Q  149 caagatggga 158  Q
    ||||||||||    
T  46431841 caagatggga 46431832  T

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Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 284 - 419
Target Start/End: Original strand, 20531210 - 20531346
Alignment:
Q  284 aaagctttgtatggattaagtcaggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgttct-atgaacata 382  Q
    ||||| |||||||||||||| |||| || |||||||||||||||||| ||| |||||||||||| |||||||||||||  |||||| ||| |||||||||    
T  20531210 aaagccttgtatggattaagacaggaacttagagcatggtatagcaagataaaatcttactttgctcaagaaaattttatgaaatgctctcatgaacata 20531309  T
Q  383 ccttatttgtgaagaacaactctgatggaaggatgct 419  Q
    | || ||| |||||||||||||| |||||| ||||||    
T  20531310 ctttctttctgaagaacaactctaatggaaagatgct 20531346  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 20530905 - 20531016
Alignment:
Q  47 tgaatgaaaaaggggaaattgaaaagtacaaagccagattggttgctaatggatatgctcagaaacttggggttgactataatgaagtgtttgcaccagt 146  Q
    ||||||| ||||| |||||| | ||||||||||||||| |    ||||| ||||||||||| || |||||  |||| || ||||||||||||||||  ||    
T  20530905 tgaatgagaaaggagaaattaagaagtacaaagccagagtaagagctaagggatatgctcaaaagcttggaattgattacaatgaagtgtttgcacatgt 20531004  T
Q  147 agcaagatggga 158  Q
     |||||||||||    
T  20531005 ggcaagatggga 20531016  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 291 - 403
Target Start/End: Original strand, 47143841 - 47143954
Alignment:
Q  291 tgtatggattaagtcaggcacctagagcatggtatagcaaaatagaatcttactttggtcaagaaaattttgagaaatgttct-atgaacataccttatt 389  Q
    ||||||||||||| |||||||||||||||||||||||||  ||| || ||||||||| ||| ||||| ||||||||||| ||| ||||||| ||  ||||    
T  47143841 tgtatggattaagacaggcacctagagcatggtatagcaggatataagcttactttgttcaggaaaactttgagaaatgctctcatgaacacactctatt 47143940  T
Q  390 tgtgaagaacaact 403  Q
    ||||||||| ||||    
T  47143941 tgtgaagaataact 47143954  T

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