View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_275 (Length: 233)
Name: NF8180A_low_275
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_275 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 1482904 - 1483136
Alignment:
| Q |
1 |
tgtttcttttctcttaatcaaattgtttggaattcaccatgactctttctttgatataatatattcttctatattacttgataatttttatttgagagga |
100 |
Q |
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| T |
1482904 |
tgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattacttgataatttttatttgagagga |
1483003 |
T |
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| Q |
101 |
agcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaaattagtgtgtaggttttaa |
200 |
Q |
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| T |
1483004 |
agcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggttttagggagttgctgggtaaaatgtgcattgaaccaaattagtgtgtaggatttaa |
1483103 |
T |
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| Q |
201 |
gggttaggggtttctgggagttgctaggcatga |
233 |
Q |
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| T |
1483104 |
ggattaggggtttctgggagttgctaggcatga |
1483136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 36717639 - 36717882
Alignment:
| Q |
3 |
tttcttttctcttaatcaaattgtttggaattcaccatgactctttctttgatataatatattcttctatattacttgataatttttattt--------- |
93 |
Q |
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| T |
36717639 |
tttcttttctcttaatcaaattgtttggaattcaccatgattctttgtttgataagatatatggttctctattacttgattgtttttttttttttttttt |
36717738 |
T |
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| Q |
94 |
----------gagaggaagcgtggaaagaaagtgtag--gtgtatgcatggtcagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaa |
181 |
Q |
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| T |
36717739 |
ttctctttctgagaggaagcgtggaaggaaagtgtagctgtgtatgcatggttgggtaagggtttttgggagttgctgggcaaaatgtgtattgaatcaa |
36717838 |
T |
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| Q |
182 |
attagtgtgtaggttttaagggttaggggtttctgggagttgcta |
226 |
Q |
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| T |
36717839 |
accaatgtgtaggatttaa-ggttaagggtttctgggagttgcta |
36717882 |
T |
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