View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_276 (Length: 233)
Name: NF8180A_low_276
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_276 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 3271964 - 3271741
Alignment:
| Q |
10 |
tattagattgtttgtctcacagctcagcatagcgttttgtgtttgtttttaacatttgttccatgcattcaccgtttgtccaaatgttagaacatctgct |
109 |
Q |
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| T |
3271964 |
tattagattctttgtctcacagctcagcatagcgttttgtgtttgtttttaacatttgttccatgtattcaccgtttgtccaaatgttagaacatctgct |
3271865 |
T |
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| Q |
110 |
taaattcaatgtcttaaacaattgtctctatgtgatggaagagtatatattgatcattcacagaggtccagattggatttcaataccattacaaattgaa |
209 |
Q |
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| T |
3271864 |
taaattcaatgtcttaaacaattgtctctatgtgatggaagagtatatattgatcattcacagagctccagattggatttcaataccattacaaattgaa |
3271765 |
T |
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| Q |
210 |
tatgataccataaatgatagtaat |
233 |
Q |
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| T |
3271764 |
taggataccataaatgatagtaat |
3271741 |
T |
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