View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_278 (Length: 232)

Name: NF8180A_low_278
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_278
NF8180A_low_278
[»] chr8 (2 HSPs)
chr8 (25-207)||(13274539-13274722)
chr8 (29-66)||(19385723-19385760)
[»] chr6 (2 HSPs)
chr6 (36-205)||(14923317-14923490)
chr6 (30-70)||(21182644-21182684)
[»] chr7 (2 HSPs)
chr7 (81-196)||(21817602-21817717)
chr7 (25-70)||(24509647-24509692)
[»] chr4 (1 HSPs)
chr4 (25-76)||(6686446-6686497)
[»] chr2 (1 HSPs)
chr2 (36-133)||(18337072-18337170)
[»] scaffold0211 (1 HSPs)
scaffold0211 (28-76)||(20891-20939)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 13274539 - 13274722
Alignment:
Q  25 tccgcgtaattatacgctaaccccccaggatataacagacccttctgaatattatt-aaggatacagaaactagcaagaatataaattattcaggaagat 123  Q
    |||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||    
T  13274539 tccgcgtaattatacgttaatcccctaggatataacatacccttctgaatattattcaaggatacagaaactagcaagaatataatttcttcaggaagat 13274638  T
Q  124 gaaacccaaaatgtgtattagcttaatgaaaattgattttgtattgtttatgtatatgtctaaaagcatgaaagtaagaataat 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  13274639 gaaacccaaaatgtgtattagcttgatgaaaattgattttgtattgtttatgtatatgtctaaaaccatgaaagtaaggataat 13274722  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 19385723 - 19385760
Alignment:
Q  29 cgtaattatacgctaaccccccaggatataacagaccc 66  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  19385723 cgtaattatacgctaaccccccaagatttaacagaccc 19385760  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 14923490 - 14923317
Alignment:
Q  36 atacgctaaccccccaggatataacagacccttctgaatattatt-aaggatacagaaactagcaagaatataaattattcaggaagatgaaacccaaaa 134  Q
    |||||||||||| ||| ||| ||||| || |||||  ||| || | |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |    
T  14923490 atacgctaacccaccatgatttaacatactcttcttgatagtaatcaaggatacagaa-ctagcaagaatataatttaatcaggaagatgaaacccaaga 14923392  T
Q  135 tgtgtattagcttaatgaaaattgattttgtattg----tttatgtatatgtctaaaagcatgaaagtaagaata 205  Q
    |||| |||||||| |||||||||||||||||||||    | ||||||||||||||||||||||||||| ||||||    
T  14923391 tgtgcattagcttgatgaaaattgattttgtattggttatgtatgtatatgtctaaaagcatgaaagtgagaata 14923317  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 21182644 - 21182684
Alignment:
Q  30 gtaattatacgctaaccccccaggatataacagacccttct 70  Q
    ||||||||||||||| ||| |||||| ||||||||||||||    
T  21182644 gtaattatacgctaatccctcaggatttaacagacccttct 21182684  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 196
Target Start/End: Complemental strand, 21817717 - 21817602
Alignment:
Q  81 aaggatacagaaactagcaagaatataaattattcaggaagatgaaacccaaaatgtgtattagcttaatgaaaattgattttgtattgtttatgtatat 180  Q
    ||||||||| ||||||| |||||||||| ||| ||| | |||||||| |||| |||||||| | ||| |||||||| ||||||  |||| || |||||||    
T  21817717 aaggatacataaactagaaagaatataatttaatcaaggagatgaaatccaagatgtgtataaacttgatgaaaatggatttttgattggttctgtatat 21817618  T
Q  181 gtctaaaagcatgaaa 196  Q
    |||| |||||||||||    
T  21817617 gtctcaaagcatgaaa 21817602  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 24509647 - 24509692
Alignment:
Q  25 tccgcgtaattatacgctaaccccccaggatataacagacccttct 70  Q
    |||||||||||||||||||| | |||||||| ||||| ||||||||    
T  24509647 tccgcgtaattatacgctaatcgcccaggatttaacaaacccttct 24509692  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 6686497 - 6686446
Alignment:
Q  25 tccgcgtaattatacgctaaccccccaggatataacagacccttctgaatat 76  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||| |||||    
T  6686497 tccgcgtaattatacgctaatcccccaggatttaacagaccattctcaatat 6686446  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 18337170 - 18337072
Alignment:
Q  36 atacgctaaccccccaggatataacagacccttctgaatattatt-aaggatacagaaactagcaagaatataaattattcaggaagatgaaacccaaa 133  Q
    |||||||||||||| || || |||||||| |||||  ||  || | |||||| || |||||||||||||||||| ||| || ||||||||||| |||||    
T  18337170 atacgctaacccccaagaatttaacagactcttcttgatggtaatcaaggatgcataaactagcaagaatataatttaatctggaagatgaaatccaaa 18337072  T

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Target: scaffold0211 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 20891 - 20939
Alignment:
Q  28 gcgtaattatacgctaaccccccaggatataacagacccttctgaatat 76  Q
    ||||||||||| ||||| || ||||||| |||||||||||||| |||||    
T  20891 gcgtaattatatgctaatcctccaggatttaacagacccttcttaatat 20939  T

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