View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_280 (Length: 232)

Name: NF8180A_low_280
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_280
NF8180A_low_280
[»] chr8 (12 HSPs)
chr8 (20-218)||(17722420-17722608)
chr8 (32-218)||(35948827-35949013)
chr8 (32-218)||(7956340-7956516)
chr8 (32-218)||(44223327-44223503)
chr8 (32-169)||(9505015-9505153)
chr8 (85-190)||(3767684-3767789)
chr8 (32-190)||(16570890-16571047)
chr8 (32-169)||(32321799-32321936)
chr8 (40-190)||(34760834-34760975)
chr8 (133-207)||(9040513-9040587)
chr8 (32-84)||(9040427-9040479)
chr8 (81-117)||(8266063-8266099)
[»] chr1 (12 HSPs)
chr1 (32-218)||(16584864-16585050)
chr1 (86-218)||(25785805-25785937)
chr1 (40-218)||(8083994-8084173)
chr1 (56-218)||(1161433-1161594)
chr1 (87-218)||(11619973-11620104)
chr1 (34-218)||(18461120-18461295)
chr1 (32-190)||(42009997-42010155)
chr1 (40-190)||(512961-513111)
chr1 (31-124)||(32678514-32678607)
chr1 (40-122)||(8414674-8414756)
chr1 (77-215)||(11911629-11911768)
chr1 (55-122)||(27320560-27320627)
[»] chr4 (7 HSPs)
chr4 (32-211)||(23107918-23108097)
chr4 (35-218)||(4413456-4413640)
chr4 (31-218)||(24466315-24466502)
chr4 (54-218)||(28319290-28319454)
chr4 (40-169)||(53393204-53393333)
chr4 (35-169)||(8606181-8606315)
chr4 (32-121)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (31-208)||(16746550-16746727)
chr5 (32-204)||(31895896-31896068)
chr5 (35-218)||(19947711-19947894)
chr5 (91-218)||(16746421-16746548)
chr5 (54-169)||(1498243-1498358)
chr5 (40-183)||(29126091-29126234)
chr5 (42-80)||(41092125-41092163)
chr5 (63-123)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (31-218)||(580-767)
[»] chr7 (13 HSPs)
chr7 (32-218)||(7352370-7352555)
chr7 (31-218)||(39695086-39695268)
chr7 (93-218)||(46993309-46993434)
chr7 (85-215)||(7994998-7995128)
chr7 (87-218)||(11727328-11727449)
chr7 (32-190)||(48070614-48070772)
chr7 (32-169)||(3996991-3997128)
chr7 (64-168)||(46265353-46265457)
chr7 (64-204)||(2922986-2923125)
chr7 (40-123)||(12013026-12013109)
chr7 (32-183)||(27226938-27227089)
chr7 (40-96)||(12471855-12471911)
chr7 (44-96)||(35738239-35738291)
[»] chr3 (12 HSPs)
chr3 (32-218)||(46655514-46655701)
chr3 (35-183)||(44471020-44471168)
chr3 (31-207)||(11503337-11503513)
chr3 (31-183)||(30554574-30554726)
chr3 (40-129)||(46892612-46892701)
chr3 (68-169)||(27524053-27524154)
chr3 (87-183)||(779533-779629)
chr3 (40-128)||(23307117-23307205)
chr3 (34-97)||(12937849-12937912)
chr3 (32-190)||(26757593-26757751)
chr3 (77-163)||(44285605-44285691)
chr3 (32-132)||(23659401-23659501)
[»] chr2 (11 HSPs)
chr2 (32-211)||(31111413-31111592)
chr2 (85-218)||(4638207-4638340)
chr2 (34-211)||(13852276-13852453)
chr2 (32-190)||(29109190-29109348)
chr2 (44-216)||(3919857-3920029)
chr2 (151-218)||(36009278-36009345)
chr2 (32-151)||(12893980-12894099)
chr2 (77-163)||(37630375-37630461)
chr2 (85-207)||(38607020-38607141)
chr2 (40-169)||(5526225-5526353)
chr2 (31-118)||(30906942-30907029)
[»] scaffold0565 (1 HSPs)
scaffold0565 (92-218)||(1844-1970)
[»] chr6 (7 HSPs)
chr6 (35-168)||(7176529-7176662)
chr6 (62-169)||(23301441-23301548)
chr6 (32-122)||(11971456-11971546)
chr6 (62-190)||(23300455-23300583)
chr6 (87-189)||(7551423-7551525)
chr6 (42-163)||(9826747-9826868)
chr6 (92-169)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (32-122)||(33729-33819)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 17722608 - 17722420
Alignment:
Q  20 atcaacgagagataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcg 119  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||    
T  17722608 atcaacgagagataggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccgga----------aaaatatccaaccttgtttggttcg 17722519  T
Q  120 gtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17722518 gtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatgat 17722420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 35948827 - 35949013
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| |||||| |||| | |||||||| |||| ||||||||||||  |||||||| | ||||||||||| || |||||||||||||||||||||| |    
T  35948827 taggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccga 35948926  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    ||||||  | || ||| ||||||||||||||||| |||||| ||||| |||||||||||  ||||||||||||||||||||||||||    
T  35948927 tccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatgat 35949013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 7956516 - 7956340
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          ||||||| | |||||| || ||| ||||||||||| |    
T  7956516 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatattcgaccttgctttgtttggtttgaaaccga 7956427  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    | ||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||    
T  7956426 ttcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgat 7956340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 44223503 - 44223327
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          |||||||   | |||||||||||| |||| ||||| |    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatatatgatcttgtttggttcagtttaaaaccga 44223414  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    || |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  44223413 tctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgat 44223327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 9505015 - 9505153
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccg-aaaaaatatccaaccttgtttggttcggtttgaaacca 130  Q
    ||||||| ||||||||| | |||||||| |||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||| ||  ||| |     
T  9505015 taggggtgtaagtggtttggataaaaccgatgaaaccgaaaatccaaacctaaccaaaacgaaaaaaatatccaaccttgtttggttcgattcaaaatcg 9505114  T
Q  131 atccgaactaatcgaaaccgatctagtttggtttggttc 169  Q
    | |||||| || | |||||||| |||||||||| |||||    
T  9505115 aaccgaaccaaccaaaaccgatatagtttggttcggttc 9505153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 3767789 - 3767684
Alignment:
Q  85 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 184  Q
    ||||||||||||| ||||| ||||||||| ||||||||  ||||| | |||||| |||| |||||||||||||||||||||||||  | ||||||||||     
T  3767789 ccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaatctaaaccgatctagtttggtttggttctcggttttttatttt 3767690  T
Q  185 gagatc 190  Q
    ||||||    
T  3767689 gagatc 3767684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 16571047 - 16570890
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||| ||||| | | |||||| |||||| | ||| | |||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| |    
T  16571047 taggggtgtaattggtttggacaaaaccgatgaaatcaaaaattcaaaccgaaccaaacc-aaaaaatatccaaccttgtttggtttggttcaaaaccga 16570949  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 190  Q
     || ||| || | ||||||||||| ||||||| |||||  ||||||| |||| ||||||    
T  16570948 accaaaccaacctaaaccgatctaatttggttaggttctcgatttttaattttgagatc 16570890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 32321799 - 32321936
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    |||||||  |||||||||| |||||||  ||||||||||||  | ||||| || |||||||||||| ||| | ||||||||||||||||||| ||| |||    
T  32321799 taggggtgcaagtggttcggataaaactgatgaaaccgaaaacctaaaccaaatcaaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaa 32321898  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttc 169  Q
     |||||  ||   ||||||||||| ||||||| |||||    
T  32321899 accgaatcaacataaaccgatctaatttggttcggttc 32321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 34760975 - 34760834
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 139  Q
    |||| |||||||| |||||| |||||||||||| ||||||||||         ||||| ||||  | ||||||||||||||||  ||| | | ||||||     
T  34760975 taagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccga---------aaaaagtatctgatcttgtttggttcggttcaaaatcgaaccgaacc 34760885  T
Q  140 aatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 190  Q
    || | ||||||||||||||||||||||||| || ||||| |||| ||||||    
T  34760884 aacctaaaccgatctagtttggtttggttcttggtttttgattttgagatc 34760834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 9040513 - 9040587
Alignment:
Q  133 ccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 207  Q
    |||||| |||| |||||||||| ||||||||||||||  | ||||| |||| |||||||  ||||||||||||||    
T  9040513 ccgaaccaatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 9040427 - 9040479
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaa 84  Q
    ||||||| |||| |||||| |||||||| |||||| |||||||||||||||||    
T  9040427 taggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaa 9040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 8266063 - 8266099
Alignment:
Q  81 cgaaccaaaccgaaaaaatatccaaccttgtttggtt 117  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  8266063 cgaaccaaaccgaaaaagtatccaaccttatttggtt 8266099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 16585050 - 16584864
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16585050 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16584951  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||    
T  16584950 tccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatgat 16584864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 25785805 - 25785937
Alignment:
Q  86 caaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcg 185  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  25785805 caaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcg 25785904  T
Q  186 agatctgtgaaaccgatgaaccaatccgatgat 218  Q
    ||||| |||||||||||||||||||||||||||    
T  25785905 agatccgtgaaaccgatgaaccaatccgatgat 25785937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 8083994 - 8084173
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatccgaac 138  Q
    ||||||||||| | | |||||| |||| |||||||||||||  || ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  8083994 taagtggttcggacataaccaacgaaatcgaaagtccaaactaaatcaaaccgaaaaaaatatccgaccttgtttggtttggtttgaaaccaatccgaac 8084093  T
Q  139 taatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
     ||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| |||||| ||||||||||||    
T  8084094 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgat 8084173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 1161594 - 1161433
Alignment:
Q  56 aaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatcta 155  Q
    |||||| |||| | |||||  ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| | | ||||||||||||||||    
T  1161594 aaccaacgaaatcaaaagtttaaaccgaaccaaaccgaaaaa-tatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatcta 1161496  T
Q  156 gtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    ||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||    
T  1161495 gtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgat 1161433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 11619973 - 11620104
Alignment:
Q  87 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 186  Q
    ||||| ||||||||||| | |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||| ||    
T  11619973 aaaccaaaaaaatatccgatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttga 11620072  T
Q  187 gatctgtgaaaccgatgaaccaatccgatgat 218  Q
    ||||||||||||||||||||||||||||||||    
T  11620073 gatctgtgaaaccgatgaaccaatccgatgat 11620104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 18461120 - 18461295
Alignment:
Q  34 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatc 133  Q
    ||||| |||||||||| || |||||||| |||||| |||||||||||| |||||||         ||||| ||||||||| ||||||||| ||| | |||    
T  18461120 ggggtgtaagtggttcaaacaaaaccaacgaaaccaaaagtccaaaccaaaccaaa---------tatccgaccttgtttagttcggtttcaaatcgatc 18461210  T
Q  134 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
     | || |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18461211 tggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatgat 18461295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 42010155 - 42009997
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| |||| |||||| || ||||||| |||||||| ||||||||| | |||||||||||||||||||| || |||||||||||||||||||||| |    
T  42010155 taggggtgtaagcggttcggattaaaccaacgaaaccgatagtccaaactggaccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccga 42010056  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 190  Q
    ||| ||| ||| |||||||||||||||| |||||  ||||| ||||| |||| ||||||    
T  42010055 tccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatc 42009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 512961 - 513111
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 139  Q
    ||||||||||| | |||||  |||||| | |||  ||||| ||||||||||||||||| ||||||| ||||||||||||||||  ||||||| ||||||     
T  512961 taagtggttcggacaaaactgatgaaatcaaaaacccaaatcgaaccaaaccgaaaaagtatccaatcttgtttggttcggttcaaaaccaaaccgaacc 513060  T
Q  140 aatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 190  Q
    || | |||||||||||||||| || | ||| | |||||| |||| ||||||    
T  513061 aacctaaaccgatctagtttgattcgattcttaatttttaattttgagatc 513111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 32678607 - 32678514
Alignment:
Q  31 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttg 124  Q
    |||| ||| ||||||||||||| |||||| |||||| ||||| | |||||||||| || |||||||||||||| ||||||||||||| ||||||    
T  32678607 atagaggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaactaagccgaaaaaatatccgaccttgtttggtttggtttg 32678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 8414756 - 8414674
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 122  Q
    ||||||||||| | |||||| ||||||| |||| ||||||| |||| ||||||||||| ||||| ||||||||||||| ||||    
T  8414756 taagtggttcggacaaaaccgatgaaactgaaaatccaaactgaacaaaaccgaaaaagtatccgaccttgtttggtttggtt 8414674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 11911629 - 11911768
Alignment:
Q  77 aaaccgaaccaaaccgaaaaaa-tatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatt 175  Q
    ||||| ||||||  |||||||| ||||| ||||||||||||||||||  ||||| | |||||| || | |||||||||||||||| ||| |||| || ||    
T  11911629 aaaccaaaccaattcgaaaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggtt 11911728  T
Q  176 ttttatttcgagatctgtgaaaccgatgaaccaatccgat 215  Q
    ||| |||| || ||| |   |||||||||||||| |||||    
T  11911729 tttaattttgaaatccgatgaaccgatgaaccaaaccgat 11911768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 27320627 - 27320560
Alignment:
Q  55 aaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 122  Q
    ||||| |||||||||||| || |||| ||| |||| | ||||| ||||| ||||||||||||||||||    
T  27320627 aaaccgatgaaaccgaaaatctaaactgaatcaaatcaaaaaagtatccgaccttgtttggttcggtt 27320560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 23108097 - 23107918
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||| |    
T  23108097 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccga 23107998  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 211  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  23107997 tccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatc 23107918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 4413456 - 4413640
Alignment:
Q  35 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatc 133  Q
    |||| ||||||||||| |||||||||| |||||| ||||| ||||| |||| | |||||||| ||||||| | ||||||||||||||||| ||||| |||    
T  4413456 gggtgtaagtggttcggataaaaccaacgaaaccaaaagttcaaactgaactagaccgaaaaaaatatccgatcttgtttggttcggtttaaaaccgatc 4413555  T
Q  134 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||    
T  4413556 cgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaatccgatgat 4413640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 24466502 - 24466315
Alignment:
Q  31 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 130  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| |||||||||||  | |||||||||||||||||||||||     
T  24466502 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 24466403  T
Q  131 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    |||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||    
T  24466402 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgat 24466315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 28319454 - 28319290
Alignment:
Q  54 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 153  Q
    |||||||| |||| |||||||| ||| ||||||||||||||||||||||  || ||||||||||||||||||||||  ||||||| |||| ||| ||||     
T  28319454 aaaaccaacgaaatcgaaagtctaaatcgaaccaaaccgaaaaaatatctgacattgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatt 28319355  T
Q  154 tagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    || |||||||||||||||| ||||| ||||||||||  ||||| | |||||| ||||| ||||||    
T  28319354 taatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaatctgatgat 28319290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 53393333 - 53393204
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 139  Q
    ||||||||||| | |||||| |||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||  | ||||||     
T  53393333 taagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccgaacc 53393234  T
Q  140 aatcgaaaccgatctagtttggtttggttc 169  Q
    || | ||||||||||||||||||| |||||    
T  53393233 aacctaaaccgatctagtttggttcggttc 53393204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 8606315 - 8606181
Alignment:
Q  35 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 134  Q
    |||| ||||||||||| | |||||| | ||||| || |||| |||   ||||||||||||||| |||||||| |||||||| ||||||  |||||||  |    
T  8606315 gggtgtaagtggttcggacaaaaccgacgaaactgatagtcaaaattaaaccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatc 8606216  T
Q  135 gaactaatcgaaaccgatctagtttggtttggttc 169  Q
    |||| |||| |||||||||| | |||||| |||||    
T  8606215 gaaccaatctaaaccgatcttggttggttcggttc 8606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 39839153 - 39839064
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggt 121  Q
    ||||||| ||||||||||| |  ||||| |||||||||||| |||||||| || ||||| |||||| |||   |||||||||||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaaccaaatcaaactgaaaaagtatttgaccttgtttggttcggt 39839064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 16746727 - 16746550
Alignment:
Q  31 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 130  Q
    |||||| | ||||||||||| | |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  16746727 atagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16746628  T
Q  131 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacca 208  Q
    |||| ||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||||||||||    
T  16746627 atccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 31895896 - 31896068
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||||| | ||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccga 31895995  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatga 204  Q
    || |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31895996 tctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 19947711 - 19947894
Alignment:
Q  35 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 134  Q
    |||| ||||||||||| | |||| ||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||    
T  19947711 gggtgtaagtggttcggacaaaatcaacgaatccgaaagtccaaaccgaaccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatcc 19947810  T
Q  135 gaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
     ||| ||||||| | |||||| |||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||    
T  19947811 aaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaatccgatgat 19947894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 16746548 - 16746421
Alignment:
Q  91 cgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 190  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  16746548 cgaaaaaatatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatc 16746449  T
Q  191 tgtgaaaccgatgaaccaatccgatgat 218  Q
     |||||| ||||||||||||||||||||    
T  16746448 cgtgaaatcgatgaaccaatccgatgat 16746421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 1498358 - 1498243
Alignment:
Q  54 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 153  Q
    |||||| |||||||||||| ||||||||||| ||||| || ||||||||| ||||||||||||||||||  ||||| | | |||| || | ||||||||     
T  1498358 aaaaccgatgaaaccgaaaatccaaaccgaatcaaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacctaaaccgatg 1498259  T
Q  154 tagtttggtttggttc 169  Q
    |||||  |||||||||    
T  1498258 tagttaagtttggttc 1498243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 29126091 - 29126234
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 139  Q
    ||||||||||| | |||||||| ||||  || | |  ||||||||||||||||||||| ||||| |  |||||||| || |||||||||| | |  |||     
T  29126091 taagtggttcggacaaaaccaacgaaatggagaatttaaaccgaaccaaaccgaaaaagtatccgattttgtttgggtcagtttgaaaccgaactaaacc 29126190  T
Q  140 aatcgaaaccgatctagtttggtttggttcatgattttttattt 183  Q
    || | |||||| |||||||| |||||||||   |||||||||||    
T  29126191 aacctaaaccggtctagtttagtttggttctcaattttttattt 29126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 41092163 - 41092125
Alignment:
Q  42 agtggttcgaataaaaccaatgaaaccgaaagtccaaac 80  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  41092163 agtggttcgaacaaaaccaatgaaaccgaaagtcaaaac 41092125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 30126283 - 30126223
Alignment:
Q  63 gaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggttt 123  Q
    |||| ||||| ||||||||||| |||||  ||||||||| | |||||||||||||| ||||    
T  30126283 gaaatcgaaactccaaaccgaatcaaacaaaaaaaatattcgaccttgtttggttctgttt 30126223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 767 - 580
Alignment:
Q  31 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 130  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| |||||||||||  | |||||||||||||||||||||||     
T  767 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 668  T
Q  131 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    |||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||    
T  667 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgat 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 7352555 - 7352370
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||| ||||||  | |||||||| ||||||||||||||||| | |||| |||||||||||||||| || || ||||||| ||||||||||| |    
T  7352555 taggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccga 7352456  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||||||    
T  7352455 tccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgat 7352370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 39695086 - 39695268
Alignment:
Q  31 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 130  Q
    |||||||| |||||||||||   |||||||| |||||||||||||||| ||     |||||||| | |||||| |||||||||||||||||||||||||     
T  39695086 ataggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaaccc-----aaaccgaagagatatccgaccttgtttggttcggtttgaaaccg 39695180  T
Q  131 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    ||| |||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||    
T  39695181 atctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatgat 39695268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 46993309 - 46993434
Alignment:
Q  93 aaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctg 192  Q
    ||||||||| | ||||||||||| |||||||||||   |||||||  ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |    
T  46993309 aaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 46993408  T
Q  193 tgaaaccgatgaaccaatccgatgat 218  Q
    |||||||||| |||||||||||||||    
T  46993409 tgaaaccgattaaccaatccgatgat 46993434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 7994998 - 7995128
Alignment:
Q  85 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 184  Q
    |||||| ||||||||||   ||||||||||||||||||  ||| | |||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||     
T  7994998 ccaaactgaaaaaatatttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt 7995097  T
Q  185 gagatctgtgaaaccgatgaaccaatccgat 215  Q
    |||||  ||||||||||||||||||||||||    
T  7995098 gagattcgtgaaaccgatgaaccaatccgat 7995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 11727449 - 11727328
Alignment:
Q  87 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 186  Q
    |||||||||||||||   |||||||||||||||||||||||||||||           ||||||||||||||||||||||||| || ||||| |||||||    
T  11727449 aaaccgaaaaaatatatgaccttgtttggttcggtttgaaaccaatca----------aaaccgatctagtttggtttggttcgtggtttttcatttcga 11727360  T
Q  187 gatctgtgaaaccgatgaaccaatccgatgat 218  Q
    |||| || |||||||| |||||||||||||||    
T  11727359 gatccgtaaaaccgataaaccaatccgatgat 11727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 48070614 - 48070772
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||||| | |||| | || ||||||||| || ||||||||| ||||| ||||||||||| |||||||||| || ||||  ||||| |    
T  48070614 taggggtgtaagtggttcggacaaaatcgatcaaaccgaaaatctaaaccgaactaaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccga 48070713  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 190  Q
     ||||||||| | |||||||||||||||| || |||||  | ||||| |||| ||||||    
T  48070714 accgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttgagatc 48070772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 169
Target Start/End: Complemental strand, 3997128 - 3996991
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||  |||| || |||||||||| ||||  ||||| |    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaagaagaatccgactttgtttggtttggttcaaaaccga 3997029  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttc 169  Q
     || ||| |||| ||||| | || |||||||| |||||    
T  3997028 acctaaccaatctaaaccaaccttgtttggttcggttc 3996991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 46265457 - 46265353
Alignment:
Q  64 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 163  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||||||  |||||||||  ||||| | |||||  |||| |||||||||| ||||||||    
T  46265457 aaaccgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtt 46265358  T
Q  164 tggtt 168  Q
    |||||    
T  46265357 tggtt 46265353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 2922986 - 2923125
Alignment:
Q  64 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 163  Q
    ||||||||||||||||| |||||||||| ||||  ||| ||||||||| ||||||||||  ||||| | |||||| |||| | ||||| || ||||| ||    
T  2922986 aaaccgaaagtccaaac-gaaccaaaccaaaaatgtattcaaccttgtatggttcggttcaaaaccgaaccgaaccaatctacaccgaccttgtttgatt 2923084  T
Q  164 tggttcatgattttttatttcgagatctgtgaaaccgatga 204  Q
     ||||| |||||||| |||| ||||||   |||||||||||    
T  2923085 cggttcttgatttttcattttgagatccaagaaaccgatga 2923125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 12013109 - 12013026
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggttt 123  Q
    ||||||||| |||||||||| |||||| ||||| |  |||  ||||| |||||||||| ||||| ||||| |||||||||||||    
T  12013109 taagtggtttgaataaaaccgatgaaatcgaaaatttaaattgaaccgaaccgaaaaagtatccgaccttatttggttcggttt 12013026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 27227089 - 27226938
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||| ||||| | |||||| |||||| | ||||||||||||||| |||||  ||||  ||||| | ||||| ||||| || |  || || |    
T  27227089 taggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaacaaacttaaaaggtatcccatcttgtctggtttggatcaaagccga 27226990  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 183  Q
     |||||| |||| ||||||| || |||||||| ||||| || ||||| ||||    
T  27226989 accgaaccaatctaaaccgaccttgtttggttcggttcttggtttttaattt 27226938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 12471911 - 12471855
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa 96  Q
    ||||||||||| |||||||| ||||||  |||| |||||||||||| |||| |||||    
T  12471911 taagtggttcggataaaaccgatgaaattgaaaatccaaaccgaacaaaactgaaaa 12471855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 35738291 - 35738239
Alignment:
Q  44 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa 96  Q
    ||||||| |||||| | | ||||| |||||||||||||||||| |||||||||    
T  35738291 tggttcggataaaatcgacgaaacggaaagtccaaaccgaaccgaaccgaaaa 35738239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 46655514 - 46655701
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaacca 130  Q
    |||||||  |||||||||| ||||| |||| |||| ||||| ||| |||| ||||||||| |||| ||||||| |||||  ||||||||||||||||||     
T  46655514 taggggtgcaagtggttcggataaatccaacgaaatcgaaaatccgaaccaaaccaaaccaaaaaaaatatccgaccttacttggttcggtttgaaaccg 46655613  T
Q  131 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    |||||||| |||| ||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||    
T  46655614 atccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 46655701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 44471020 - 44471168
Alignment:
Q  35 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 134  Q
    |||| ||||||||||| | |||||| |||||| ||||| |||||||||||||||||||||||  ||||| ||||||||| ||||||||  ||||| | ||    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaacc 44471119  T
Q  135 gaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 183  Q
     ||| |||| ||||||||||||||||||| ||||| || ||||| ||||    
T  44471120 aaaccaatctaaaccgatctagtttggttcggttcttggtttttaattt 44471168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 207
Target Start/End: Complemental strand, 11503513 - 11503337
Alignment:
Q  31 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 130  Q
    |||||||| |||| ||||   |||||||| ||||||| ||||||||||||||||||||||| ||||  ||||| ||||||| ||||  ||||  |||||     
T  11503513 ataggggtgtaagcggttaagataaaaccgatgaaactgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccg 11503414  T
Q  131 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 207  Q
    | |||||| |||||||||||||||  |||||||||||||  ||||||| |||| ||||||   ||||||||| ||||    
T  11503413 aaccgaaccaatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaacc 11503337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 30554726 - 30554574
Alignment:
Q  31 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 130  Q
    |||||||| ||| ||||||||| |||| | |||||||||||| |||||| ||| | ||||||||||| ||||| ||||||||| ||||||||  ||| |     
T  30554726 ataggggtgtaaatggttcgaacaaaatcgatgaaaccgaaaatccaaatcgagctaaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcg 30554627  T
Q  131 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 183  Q
    | |||||| |||| ||||||||||||||||||| |||||  ||||||| ||||    
T  30554626 aaccgaaccaatctaaaccgatctagtttggttcggttctcgatttttaattt 30554574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 46892612 - 46892701
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacc 129  Q
    |||||||||||   |||||| |||||||  ||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  46892612 taagtggttcgggcaaaaccgatgaaacaaaaaattcaaaccgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaacc 46892701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 27524053 - 27524154
Alignment:
Q  68 cgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggt 167  Q
    |||||||||||||  ||||||||||||||  ||| | |||||||||||||||| |  ||||||| || ||| |||| ||| ||| || |||||||| |||    
T  27524053 cgaaagtccaaactaaaccaaaccgaaaaggtattcgaccttgtttggttcggatcaaaaccaaaccaaaccaatctaaatcgaccttgtttggttcggt 27524152  T
Q  168 tc 169  Q
    ||    
T  27524153 tc 27524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 779629 - 779533
Alignment:
Q  87 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 183  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||  |  ||||| || | ||||| ||||||||||||| ||||| || ||||| ||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggtttttaattt 779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 23307205 - 23307117
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaac 128  Q
    ||||||||||||| |||| | ||||||  ||||||| ||||| |||||||| |||| | ||| ||||||||  ||||||||||| ||||    
T  23307205 taagtggttcgaacaaaatcgatgaaattgaaagtctaaaccaaaccaaactgaaatagtattcaaccttgaatggttcggtttaaaac 23307117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 12937912 - 12937849
Alignment:
Q  34 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaa 97  Q
    ||||| |||||| |||| |||||| | |||||||||||| |||||||||||| ||| |||||||    
T  12937912 ggggtgtaagtgattcggataaaatcgatgaaaccgaaaatccaaaccgaactaaatcgaaaaa 12937849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 26757593 - 26757751
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||| | | ||||||||||||| ||||| |||||| | ||| ||| ||||||| ||| | || ||||||||||  |||| ||||  |    
T  26757593 taggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaatcaaacaaaatcgaaaaagtattcgacgttgtttggtttagtttaaaactga 26757692  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 190  Q
     |||||| || | ||| |||| ||| |||||| ||||| ||  |||| |||| ||||||    
T  26757693 accgaaccaacctaaatcgatatagattggttcggttcttggattttaattttgagatc 26757751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 44285605 - 44285691
Alignment:
Q  77 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 163  Q
    ||||||||  |||||||||||||||   ||||||||||||||||||  ||||| | |||||| || | ||| |||| ||||||||||    
T  44285605 aaaccgaattaaaccgaaaaaatatatgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggtt 44285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 23659401 - 23659501
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||||  | |||| | |||||||||||| | |||||||  | ||| ||||||| |||| ||  |||||||||||||||  |||||||    
T  23659401 taggggtataagtggttcagacaaaatcgatgaaaccgaaaattcaaaccgttctaaatcgaaaaagtatctaattttgtttggttcggttcaaaaccaa 23659500  T
Q  132 t 132  Q
    |    
T  23659501 t 23659501  T

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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 31111413 - 31111592
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| |||||||||   | |||| ||| |||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||  |    
T  31111413 taggggtgtaagtggtttagacaaaatcaacgaaaccgaaaatccaaattgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaactga 31111512  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 211  Q
    || |||| ||| ||||||||||||||||||||||||||||| ||||| |||| ||||||  |||||||||| ||||||||    
T  31111513 tctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaatc 31111592  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 4638207 - 4638340
Alignment:
Q  85 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 184  Q
    ||||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||| | || ||| ||||||||||||||||||| ||||| ||||     
T  4638207 ccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcatttt 4638306  T
Q  185 gagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    |||||| |||||||||||||||||||||||||||    
T  4638307 gagatccgtgaaaccgatgaaccaatccgatgat 4638340  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 13852453 - 13852276
Alignment:
Q  34 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatc 133  Q
    ||||| ||||| ||||| | |||||||| |||| ||||||||||||  ||| |||| | ||||||||||  || ||||||| |||||||||||||| |||    
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatc 13852354  T
Q  134 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 211  Q
    | ||| |||| |||||||||||||||||||||||||||  ||||| |||| |||||| ||||||||||||||||||||    
T  13852353 caaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatc 13852276  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 29109348 - 29109190
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| ||||||||||| | |||||  ||||||| |||| ||||||||||||||||| |||||| ||||| |||||||||||||| |||  ||||| |    
T  29109348 taggggtgtaagtggttcggacaaaactgatgaaactgaaaatccaaaccgaaccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccga 29109249  T
Q  132 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 190  Q
     |||||  || | ||||| |||||||||||||||||||  | ||||| |||| ||||||    
T  29109248 accgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatc 29109190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 216
Target Start/End: Complemental strand, 3920029 - 3919857
Alignment:
Q  44 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatc 143  Q
    ||||| ||| ||||||||||||||| ||| | ||||| ||| ||||||||||||  || | || |||||||||| ||||  ||||| | |||||| || |    
T  3920029 tggttggaacaaaaccaatgaaacctaaaattcaaactgaatcaaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaac 3919930  T
Q  144 gaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatg 216  Q
     ||||||||||||||||||||||||| | |||||| |||| |||||||    |||||||||||| | ||||||    
T  3919929 taaaccgatctagtttggtttggttcttaatttttaattttgagatctaaagaaccgatgaaccgaaccgatg 3919857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 36009278 - 36009345
Alignment:
Q  151 atctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 218  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||||||||| ||||||||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgat 36009345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 12894099 - 12893980
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 131  Q
    ||||||| | ||||||||  | |||||||| |||| | ||||||||||| |||||||||| ||||  ||||| ||||||||||||||||||  |||| ||    
T  12894099 taggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaactgaaccaaaccaaaaatgtatccgaccttgtttggttcggttcaaaacaaa 12894000  T
Q  132 tccgaactaatcgaaaccga 151  Q
     |||||| |||| |||||||    
T  12893999 accgaaccaatctaaaccga 12893980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 37630375 - 37630461
Alignment:
Q  77 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 163  Q
    ||||||||||||||||||||| |||| ||||||| |||||| ||||  ||| | |||| ||| || | |||| ||||||||||||||    
T  37630375 aaaccgaaccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaacctaaactgatctagtttggtt 37630461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 38607020 - 38607141
Alignment:
Q  85 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 184  Q
    |||||||||||| |||||| |||||||||| |||| ||  ||||| | |||||| |||| |||| || || |||||||| ||||| || ||||| ||||     
T  38607020 ccaaaccgaaaatatatccgaccttgtttg-ttcgattcaaaaccgaaccgaaccaatctaaactgaccttgtttggttcggttcttggtttttcatttt 38607118  T
Q  185 gagatctgtgaaaccgatgaacc 207  Q
    ||||||  | |||||||||||||    
T  38607119 gagatccataaaaccgatgaacc 38607141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 5526225 - 5526353
Alignment:
Q  40 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 139  Q
    |||||||| || | |||||||| |||| ||||| ||||||   ||||||||||||||  ||||| ||||||||| ||||||||  ||||  |  |||||     
T  5526225 taagtggtccggacaaaaccaaagaaatcgaaaatccaaattaaaccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactga-acgaacc 5526323  T
Q  140 aatcgaaaccgatctagtttggtttggttc 169  Q
    || | ||||||||||||||||||| |||||    
T  5526324 aacctaaaccgatctagtttggttcggttc 5526353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 30907029 - 30906942
Alignment:
Q  31 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttc 118  Q
    |||||||| ||||||||| | | |||| | |||||||||||| |||| || |||||||||| ||||| | | | ||||||||||||||    
T  30907029 ataggggtgtaagtggtttggacaaaatcgatgaaaccgaaaatccagactgaaccaaaccaaaaaagttttcgaccttgtttggttc 30906942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 1970 - 1844
Alignment:
Q  92 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatct 191  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||| |||| |||| |||||| |||||||||||||||| ||||| ||||||||||      
T  1970 gaaaaaatatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattc 1871  T
Q  192 gtgaaaccgatgaaccaatccgatgat 218  Q
    |||||||||||||||||||||||||||    
T  1870 gtgaaaccgatgaaccaatccgatgat 1844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 7176662 - 7176529
Alignment:
Q  35 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 134  Q
    |||| |||||| |||| | |||||| ||||||||||||   | ||||||||||| |||||||| ||||||||||||||||||| ||||  ||| | | ||    
T  7176662 gggtgtaagtgtttcggacaaaaccgatgaaaccgaaaactctaaccgaaccaacccgaaaaagtatccaaccttgtttggtttggttcaaaatcgaacc 7176563  T
Q  135 gaactaatcgaaaccgatctagtttggtttggtt 168  Q
    |||| || | ||||||||||||||||||| ||||    
T  7176562 gaaccaacctaaaccgatctagtttggttcggtt 7176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 23301441 - 23301548
Alignment:
Q  62 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 161  Q
    ||||||||||| | ||||| ||||||||||||||||  || | ||||||||||||||||||  ||||| | |||||| || | |||| ||||||||||||    
T  23301441 tgaaaccgaaaattcaaactgaaccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttgg 23301540  T
Q  162 tttggttc 169  Q
    || |||||    
T  23301541 ttcggttc 23301548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 11971456 - 11971546
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 122  Q
    ||||||| |||||||||   ||||||||||||||| |||||  | ||||||||| ||||||||||  ||||| | ||||||||||||||||    
T  11971456 taggggtgtaagtggtttagataaaaccaatgaaatcgaaaacctaaaccgaactaaaccgaaaatgtatccgatcttgtttggttcggtt 11971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 23300455 - 23300583
Alignment:
Q  62 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 161  Q
    ||||||||||| | ||||||||||||||||||||||  |  | ||||||||||||||||||  ||||  | |||||| || | |||| |||||||||| |    
T  23300455 tgaaaccgaaaattcaaaccgaaccaaaccgaaaaagaaatcgaccttgtttggttcggttcaaaactgaaccgaaccaacctaaactgatctagtttag 23300554  T
Q  162 tttggttcatgattttttatttcgagatc 190  Q
    || |||||  | ||||| |||| ||||||    
T  23300555 ttcggttctcggtttttaattttgagatc 23300583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 7551525 - 7551423
Alignment:
Q  87 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 186  Q
    ||||||||||  |||||||| ||||||||||||| |  ||||||| |||||| |||| ||||||   | |||||| | ||||| |||||||| |||||||    
T  7551525 aaaccgaaaaggtatccaacattgtttggttcggatcaaaaccaaaccgaaccaatctaaaccggctttgtttgggtcggttcttgatttttcatttcga 7551426  T
Q  187 gat 189  Q
    |||    
T  7551425 gat 7551423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 9826747 - 9826868
Alignment:
Q  42 agtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaacc-ttgtttggttcggtttgaaaccaatccgaacta 140  Q
    ||||||||| | |||||| | |||||| ||| | ||||| ||||||||||| |||| ||||| ||| || ||||||||||||  ||||| | |||||| |    
T  9826747 agtggttcggagaaaaccgaagaaaccaaaaattcaaactgaaccaaaccg-aaaagtatccgacctttatttggttcggttgaaaaccgaaccgaacca 9826845  T
Q  141 atcgaaaccgatctagtttggtt 163  Q
    |   |||||||||||||||||||    
T  9826846 acataaaccgatctagtttggtt 9826868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 23585913 - 23585990
Alignment:
Q  92 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttc 169  Q
    |||||| ||||| ||||||||| ||||||||  ||||| | || ||||||   |||||||| ||||||||||||||||    
T  23585913 gaaaaagtatccgaccttgttttgttcggttcaaaaccgaaccaaactaacgtaaaccgatatagtttggtttggttc 23585990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 33729 - 33819
Alignment:
Q  32 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 122  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||||||  |||||||||||||||  ||||  ||||||| ||||| ||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaattgaaccaaaccgaaaatgtatctgaccttgtctggtttggtt 33819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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