View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_285 (Length: 230)
Name: NF8180A_low_285
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_285 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 36335922 - 36335699
Alignment:
| Q |
7 |
ccatgttttttctaaagaaaatcattgcaatggttaccggtagaagcttgtaattcacaattgaagtacaattctgcagtccattttacacctcaaattt |
106 |
Q |
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| T |
36335922 |
ccatgttttttctaaagaaaatcattgcaatggttaccggtagaagcttgtaattcacaattggagtacaattctgcagtccattttacacctcaaattt |
36335823 |
T |
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| Q |
107 |
ctttactaccttttcctttaagcctatatataatttagttgatgggtctaaatttaatgacacacgatgatttgtgcaaaagttgctagggtcctctcag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36335822 |
ctttactaccttttcctttaagcctatatataatttagttgatgggtctaaatttaatgacacacgatgatttgtgcaaaagttgctagggtcctctcag |
36335723 |
T |
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| Q |
207 |
accactctttagttggatcacaga |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
36335722 |
accactctttagttggatcacaga |
36335699 |
T |
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