View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_29 (Length: 412)
Name: NF8180A_low_29
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 23 - 404
Target Start/End: Complemental strand, 34592643 - 34592262
Alignment:
| Q |
23 |
cagcattcaactcaatcgtttgtttcaaaagaaatctccgctgaaatagattctcatgcttgtaagatgtatgtcttgacacccacgagctagtttcaag |
122 |
Q |
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| T |
34592643 |
cagcattcaactcaattgtttgtttcaaaagaaatctccgctgaaatagattctcatgcttgtaagatgtatgtcttgacacccacgagctagtttcaag |
34592544 |
T |
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| Q |
123 |
tggaagagctgaaattattgttcaatcatattaattttcaataagatgtactagaataaattcatatatatgttggactaatgatgctatatgtgtttgt |
222 |
Q |
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| T |
34592543 |
tggaagagctgaagttattgttcaatcatattaattttcaataagatgtgctagaataaattcatatatatgttggattaatgatgctatatgtgtttgt |
34592444 |
T |
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| Q |
223 |
aattttgatgcattaagacgatcttaatatcatggaaatgtatgacttttccttcttgatgcaatttgaaagccaattaagcttattatttacttttgaa |
322 |
Q |
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| T |
34592443 |
aattttgatgcattaagacgatcttaatatcatggaaatgtatgacttttccttcttgatgcaatttgaaagccaattaagcttattatttactttcaaa |
34592344 |
T |
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| Q |
323 |
acatttcataaaataaattttaaacacccttcggtttttaaaactgtacctggcttaatcattcagttttttcatattcttc |
404 |
Q |
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| T |
34592343 |
acatttcataaaataaattttaaacacccttcggtttttaaaactgtacctggcttaaccattcagttttttcattttcttc |
34592262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 32589350 - 32589314
Alignment:
| Q |
69 |
tagattctcatgcttgtaagatgtatgtcttgacacc |
105 |
Q |
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| T |
32589350 |
tagattcacatgcttgtaagatgtatgttttgacacc |
32589314 |
T |
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