View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_290 (Length: 230)

Name: NF8180A_low_290
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_290
NF8180A_low_290
[»] chr4 (2 HSPs)
chr4 (27-213)||(18975854-18976040)
chr4 (147-186)||(22337458-22337497)
[»] chr8 (1 HSPs)
chr8 (140-182)||(4715310-4715352)
[»] chr6 (2 HSPs)
chr6 (140-182)||(6071166-6071208)
chr6 (140-174)||(8481960-8481994)
[»] chr2 (2 HSPs)
chr2 (140-187)||(2336658-2336705)
chr2 (138-174)||(30312821-30312857)
[»] chr1 (2 HSPs)
chr1 (140-187)||(3458680-3458727)
chr1 (137-167)||(50081384-50081414)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 18976040 - 18975854
Alignment:
Q  27 tactactttgtattgtagtagttaaaatgtggttcaaaatttgaaaatgattcacctacataagttgtttttgttgtgaagtaaatgtaagttataaatc 126  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||     
T  18976040 tactactttgtattgtagtagttaaaatgtggttcgaaatttgaaaatgatttacatacataagttgtttttgttgtgaagtaaatgtaagttataaata 18975941  T
Q  127 tgacattgtgtgaaaaagtggaggttgaacactttataaatgagatgatctataaattcaacacgtaagattttggataaatatgtg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18975940 tgacattgtgtgaaaaagtggaggttgaacactttataaatgagatgatctataaattcaacacgtaagattttggataaatatgtg 18975854  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 22337458 - 22337497
Alignment:
Q  147 gaggttgaacactttataaatgagatgatctataaattca 186  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  22337458 gaggttgaacactttataactgagatgacctataaattca 22337497  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 4715310 - 4715352
Alignment:
Q  140 aaaagtggaggttgaacactttataaatgagatgatctataaa 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  4715310 aaaagtggaggttgaacactttataaatgagacgatctataaa 4715352  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 6071166 - 6071208
Alignment:
Q  140 aaaagtggaggttgaacactttataaatgagatgatctataaa 182  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  6071166 aaaagtggaggttgaacactttataagtgagatgatccataaa 6071208  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 8481960 - 8481994
Alignment:
Q  140 aaaagtggaggttgaacactttataaatgagatga 174  Q
    |||||||||||||||||||||||||||||||||||    
T  8481960 aaaagtggaggttgaacactttataaatgagatga 8481994  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 2336658 - 2336705
Alignment:
Q  140 aaaagtggaggttgaacactttataaatgagatgatctataaattcaa 187  Q
    |||||||||||||||||||||||||| ||||| || | ||||||||||    
T  2336658 aaaagtggaggttgaacactttataagtgagaggacccataaattcaa 2336705  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 30312821 - 30312857
Alignment:
Q  138 gaaaaagtggaggttgaacactttataaatgagatga 174  Q
    |||||||||||||||||||||||||||| | ||||||    
T  30312821 gaaaaagtggaggttgaacactttataacttagatga 30312857  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 3458727 - 3458680
Alignment:
Q  140 aaaagtggaggttgaacactttataaatgagatgatctataaattcaa 187  Q
    |||| |||||||||| ||| ||||||||||||||||| ||||||||||    
T  3458727 aaaaatggaggttgagcacgttataaatgagatgatccataaattcaa 3458680  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 50081414 - 50081384
Alignment:
Q  137 tgaaaaagtggaggttgaacactttataaat 167  Q
    |||||||||||||||||||||||||||||||    
T  50081414 tgaaaaagtggaggttgaacactttataaat 50081384  T

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