View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_291 (Length: 229)
Name: NF8180A_low_291
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_291 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 47332859 - 47333081
Alignment:
| Q |
7 |
tctcttttcttcaccaacgttaccttaacatcattgcttcacaagcaaatgttcttgttgtttctgttgaatatagacttgcaccagaacaccctcttcc |
106 |
Q |
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| T |
47332859 |
tctcttttcttcaccaacgttaccttaacatcattgcttcacaagcaaatgttcttgttgtttctgttgaatatagacttgcaccagaacaccctcttcc |
47332958 |
T |
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| Q |
107 |
tgctgcatatgatgatggttggttttctctcaaatggatcacttctcattccatcaacaacatcaataacgctgaaccatggttaatcaaatacggtgat |
206 |
Q |
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| T |
47332959 |
tgctgcatatgatgatggttggttttctctcaaatggatcacttctcattccatcaacaacatcaataacgctgaaccatggttaatcaaatacggtgat |
47333058 |
T |
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| Q |
207 |
tttgaccgtttttacattggtgg |
229 |
Q |
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| T |
47333059 |
tttgaccgtttttacattggtgg |
47333081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 47301359 - 47301406
Alignment:
| Q |
63 |
gttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
110 |
Q |
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| T |
47301359 |
gttgtttctgttgaatacagacttgctccagaacaccctctacctgct |
47301406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 47304257 - 47304304
Alignment:
| Q |
63 |
gttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
110 |
Q |
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| T |
47304257 |
gttgtttctgttgaatacagactcgctccagaacaccctctacctgct |
47304304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 17841494 - 17841543
Alignment:
| Q |
61 |
ttgttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
110 |
Q |
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| T |
17841494 |
ttgttgtttctgttgaatacagactcgctccagaacaccctctacctgct |
17841543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 17473195 - 17473243
Alignment:
| Q |
40 |
ttgcttcacaagcaaatgttcttgttgtttctgttgaatatagacttgc |
88 |
Q |
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| T |
17473195 |
ttgcatcacaagcaaatgtgattgttgtttcaattgaatatagacttgc |
17473243 |
T |
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