View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_293 (Length: 229)

Name: NF8180A_low_293
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_293
NF8180A_low_293
[»] chr2 (2 HSPs)
chr2 (1-185)||(6408236-6408413)
chr2 (91-165)||(5568350-5568424)
[»] chr5 (1 HSPs)
chr5 (91-178)||(18598940-18599026)
[»] chr4 (4 HSPs)
chr4 (91-185)||(12105365-12105459)
chr4 (91-173)||(46644135-46644217)
chr4 (91-186)||(32179254-32179344)
chr4 (186-223)||(22461274-22461311)
[»] chr3 (1 HSPs)
chr3 (91-173)||(1326444-1326526)
[»] chr6 (1 HSPs)
chr6 (91-185)||(23267273-23267365)
[»] chr1 (1 HSPs)
chr1 (91-149)||(9380054-9380112)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 6408236 - 6408413
Alignment:
Q  1 gcggcggagatggggcggaggtaggaggccgagtgttggagaagaggagaaaccgtgaaaagctaaagaaagggagaagagagagtggttgagtggttgt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |  || ||||||||||        ||||||||||    
T  6408236 gcggcggagatggggcggaggtaggaggctgagtgttggagaagaggagaaaccgtgaaaagctacatgaa-ggagaagaga--------gagtggttgt 6408326  T
Q  101 gagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtg--taccaaaagagtggtctatttatcattttcc 185  Q
    |||||||||||| || ||| ||||||||||||| |||||| |||||||| ||||  |||||||||||| ||||||||||||||||||    
T  6408327 gagatgaaattcctaaaatatcccttgccacatgagcagtggtacaaaggggtgtataccaaaagagttgtctatttatcattttcc 6408413  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 5568350 - 5568424
Alignment:
Q  91 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagag 165  Q
    |||||| ||||||||||||||  || |||||||||||||||||||||||| |||||||| ||||||  |||||||    
T  5568350 gagtggatgtgagatgaaatttctaaaatgtcccttgccacatcagcagtggtacaaaggggtgtattaaaagag 5568424  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 18599026 - 18598940
Alignment:
Q  91 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctatttatc 178  Q
    |||||||||||||||| ||||| || |||||||||| |||||||| |||| |||||||| ||||||||||||||||||||||| ||||    
T  18599026 gagtggttgtgagatgtaattcttaaaatgtcccttaccacatcaacagtggtacaaag-ggtgtaccaaaagagtggtctatgtatc 18598940  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 12105365 - 12105459
Alignment:
Q  91 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctatttatcattttcc 185  Q
    |||| ||||||||||||||||| || ||| |||||||||||||||||||| ||| |||  ||||||||||||| ||||||||| |||| ||||||    
T  12105365 gagttgttgtgagatgaaattcctaaaatatcccttgccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgtatctttttcc 12105459  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 46644217 - 46644135
Alignment:
Q  91 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctat 173  Q
    |||| ||||| ||||||||||| || ||||||||||||||||||| |||| |||||||  |||||||||||||||||||||||    
T  46644217 gagtagttgtaagatgaaattcctaaaatgtcccttgccacatcaccagtggtacaaaagggtgtaccaaaagagtggtctat 46644135  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 32179254 - 32179344
Alignment:
Q  91 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctatttatcattttcca 186  Q
    |||||||||||||||||||||| || ||| |||||||||||||||||||| |||||||| |||||||     ||||||||||| |||| |||||||    
T  32179254 gagtggttgtgagatgaaattcctaaaatatcccttgccacatcagcagtggtacaaaggggtgtac-----gagtggtctatgtatctttttcca 32179344  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 22461274 - 22461311
Alignment:
Q  186 aattcataactaggaggaattcataactataaagtaca 223  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22461274 aattcataactaggaggaattcataactataaagtaca 22461311  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 1326444 - 1326526
Alignment:
Q  91 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctat 173  Q
    |||| ||||||||||||||||| || |||||||||||||||||||||||| |||||||   |||||||||||| |||||||||    
T  1326444 gagtagttgtgagatgaaattcctaaaatgtcccttgccacatcagcagtggtacaaaagagtgtaccaaaagggtggtctat 1326526  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 23267365 - 23267273
Alignment:
Q  91 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctatttatcattttcc 185  Q
    |||||| ||||||||||||| | || |||||||||||||||||||  || ||||||||| ||| ||||||||||||||||||| |||| ||||||    
T  23267365 gagtggctgtgagatgaaatccctaaaatgtcccttgccacatcaatag-tgtacaaag-ggtctaccaaaagagtggtctatgtatctttttcc 23267273  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 9380054 - 9380112
Alignment:
Q  91 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaag 149  Q
    |||||||||||||||||||| | || |||||||||||||||||||||||| ||||||||    
T  9380054 gagtggttgtgagatgaaatccctaaaatgtcccttgccacatcagcagtggtacaaag 9380112  T

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