View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_294 (Length: 229)
Name: NF8180A_low_294
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_294 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 13482214 - 13482014
Alignment:
| Q |
24 |
taaatattgtagggcactgcaaattaataggtactatatagcacactatggaatattgagttagagtaatattttagaaattagaaaattgattagcaca |
123 |
Q |
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| T |
13482214 |
taaatattgtagggcactgcaaattaataggtactatatagcacactatggaatattgagttagagtaatattttagaaattagaaaattgattagcata |
13482115 |
T |
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| Q |
124 |
ttatatcaacaaaggagaatgat-ataattaagttatatgacagaacattgatatggtcttaattttcccatctgttacattacatatatgtgttctttt |
222 |
Q |
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| T |
13482114 |
ttatatcaacaaaggagaatgataataattaagttatatgacaaaacattgatatggtcttaattttcccatctgttacattacatatatgtgttctttt |
13482015 |
T |
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| Q |
223 |
t |
223 |
Q |
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| T |
13482014 |
t |
13482014 |
T |
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