View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_295 (Length: 229)
Name: NF8180A_low_295
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_295 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2411001 - 2410782
Alignment:
| Q |
1 |
gggactttaaaattcttcgaacaatctaaacttgttgttacaaacaccaaaacaaaaacaacactgtgttactgtaacacttttcttttgttaacaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |||||||| |
|
|
| T |
2411001 |
gggactttaaaattcttcgaacaatctaaacttgttgttacaa-caccaaaacaaaaacaacactgtgttactgtaacgctctt--------aacaaaat |
2410911 |
T |
|
| Q |
101 |
aatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2410910 |
aatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctc |
2410811 |
T |
|
| Q |
201 |
accaaacctgataaacgccgtcctgatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2410810 |
accaaacctgataaacgccgtcctgatga |
2410782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University