View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_297 (Length: 229)
Name: NF8180A_low_297
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_297 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41256082 - 41256310
Alignment:
| Q |
1 |
atggtgtttttggtgcaaatgcagtggttgatggaaaggaattacctcgtttgaataagagaagttgtaattttttgtttcagcagttgagggttttttc |
100 |
Q |
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| T |
41256082 |
atggtgtttttggtgcaaatgcagtggttgatggaaaggaattacctcgtttgaataagagaagttgtaattttttgtttcagcagttgagggttttttc |
41256181 |
T |
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| Q |
101 |
tccttatgttagttttgatgttaggaagaaagctaagagattgtttagtctgtggaaggttaacttggtgaatgatgttcatgaatcatgttggaccatg |
200 |
Q |
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| T |
41256182 |
tccttatgttagttttgatgttaggaagaaagctaagagattgtttagtctgtggaaggttaacttggtgaatgatgttcatgaatcatgttggaccatg |
41256281 |
T |
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| Q |
201 |
gcttttttgcaatttgttgctgtgtatga |
229 |
Q |
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| T |
41256282 |
gcttttttgcaatttgttgctgtgtatga |
41256310 |
T |
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