View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_299 (Length: 229)
Name: NF8180A_low_299
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_299 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31809877 - 31809657
Alignment:
| Q |
1 |
attgttaaaatttccttatgcaattgtgctaatgtgtccctgtagcagtcatttgacaacattttgtactaaagagcgtatgaagaaacaacaacggttt |
100 |
Q |
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|||||||||||| || |||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31809877 |
attgttaaaattaccctatgcaattgtgctaatgagtcactgtagcagttatttgacaacattttgtactaaatagcgtatgaagaaacaacaacggttt |
31809778 |
T |
|
| Q |
101 |
gtccaaattccgctgtgctataccgtcgctatagcttttatttaacaacattgttttctatgaaccatggatcaaaacggccggtactcttactaatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31809777 |
gtccaaattccgctgtgctataccgtcgctatagcttttatttaacaacattgttttctatgaaccatggatcaaaacggccggtactcttactaatact |
31809678 |
T |
|
| Q |
201 |
actatctgtctctctctgata |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
31809677 |
actatctgtctctctctgata |
31809657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 21226983 - 21226912
Alignment:
| Q |
51 |
atttgacaacattttgtactaaagagcgtatgaagaaacaacaacggtttgtccaaattccgctgtgctata |
122 |
Q |
| |
|
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| T |
21226983 |
atttgacaacattttgtactgaatagcgtatggaggaacaatagctttttgttcaaattccgctatgctata |
21226912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 7430176 - 7430113
Alignment:
| Q |
51 |
atttgacaacattttgtactaaagagcgtatgaagaaacaacaacggtttgtccaaattccgct |
114 |
Q |
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| T |
7430176 |
atttgacaacatcttgtactaaatagcgtattgtggaacaatagcggtttgtccaaattccgct |
7430113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 4762554 - 4762617
Alignment:
| Q |
51 |
atttgacaacattttgtactaaagagcgtatgaagaaacaacaacggtttgtccaaattccgct |
114 |
Q |
| |
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||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||| ||||| |
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|
| T |
4762554 |
atttgacaacattttgtactaaatagcgtattgcggagcaataacggtttgtccaaatgccgct |
4762617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 43802236 - 43802176
Alignment:
| Q |
51 |
atttgacaacattttgtactaaagagcgtatgaagaaacaacaacggtttgtccaaattcc |
111 |
Q |
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||||| |||||||||||| | || ||||||| | |||||||||| ||||||||| |||||| |
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| T |
43802236 |
atttggcaacattttgtattgaacagcgtataacgaaacaacaatggtttgtcctaattcc |
43802176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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