View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_30 (Length: 410)
Name: NF8180A_low_30
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 66 - 400
Target Start/End: Original strand, 7618992 - 7619342
Alignment:
| Q |
66 |
atcttttgaactgggttttaaaacattcaaatctttcaacagagcaaattcttgacttgattctcagcttgctctttgctggtcatgaaacttcatctgt |
165 |
Q |
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| T |
7618992 |
atcttttgaactgggttttaaaacattcaaatctttcaacagagcaaattcttgacttgattctcagcttgctctttgctggtcatgaaacttcatctgt |
7619091 |
T |
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| Q |
166 |
ttccatagctcttgctatttactttcttcctggttgtcctcaagctatactacaattgagggtaagcaattttagtgatgctattattatttatc----- |
260 |
Q |
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| T |
7619092 |
ttccatagctcttgctatttactttcttcctggttgtcctcaagctatactacaattaagggtaagcaattttagtgatgctattattatttatctatga |
7619191 |
T |
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| Q |
261 |
--tatgaatacagacata-acacag------acactgacacgcaaacaccactaattatactttttggtattgtgtcggtg--tccggacacctaatttg |
349 |
Q |
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| T |
7619192 |
agtatgaatacaaacatagacaccggacacaacacagacacgcaaacaccactaattatattttttggtattgtgtcggtggtgtcggacacgtaatttg |
7619291 |
T |
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| Q |
350 |
agaagtgttggtgcttcagttttccaaagaatacatacatgttctttctca |
400 |
Q |
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| T |
7619292 |
agaagtgtttgtgcttcagttttccaaagaatacatacatgttctttctca |
7619342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 77 - 232
Target Start/End: Complemental strand, 33106800 - 33106645
Alignment:
| Q |
77 |
tgggttttaaaacattcaaatctttcaacagagcaaattcttgacttgattctcagcttgctctttgctggtcatgaaacttcatctgtttccatagctc |
176 |
Q |
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| T |
33106800 |
tgggttttaaagcattcaaatctttccactgagcaaattcttgacttgattctaagtttactttttgctggccatgaaacttcatctgtggctatagctc |
33106701 |
T |
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| Q |
177 |
ttgctatttactttcttcctggttgtcctcaagctatactacaattgagggtaagc |
232 |
Q |
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| T |
33106700 |
tagctatttactttttgcctagttgtcctcaagctatacaacaattaagggtaagc |
33106645 |
T |
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