View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_304 (Length: 228)
Name: NF8180A_low_304
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_304 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 37821431 - 37821240
Alignment:
| Q |
29 |
ttatcatacataactatagcattttattaatgatatatgttaagagcaattccaaaactcatggtaatgtgatgtgactgctggcctcacaatttcttcc |
128 |
Q |
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| T |
37821431 |
ttatcatacataactatagcattttaataatgatat--gttaagagcaattccaaaactcatggtaatgtgatgtgactgctggcctcacaatttcttcc |
37821334 |
T |
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| Q |
129 |
gtagtactcgtatataaaagtccacttagtgggcattccactaaccactctacaaagttttaaatttttggtgtcattggtctcctatcatttc |
222 |
Q |
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| T |
37821333 |
gtagtactcgtatataaaagtccacttagtggccattccactaaccactctacaaagttttaaatttttggtgtcattggtctcctatcatttc |
37821240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37821471 - 37821438
Alignment:
| Q |
1 |
taatactattcatctcttacatatataattatca |
34 |
Q |
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| T |
37821471 |
taatactattcatctcttacatatataattatca |
37821438 |
T |
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