View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_306 (Length: 227)
Name: NF8180A_low_306
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_306 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 3157834 - 3158009
Alignment:
| Q |
21 |
caaatataatt-ctttattttattttcaaaattcaagtaatattactggccaataaatgaacataaatcaataaataatgtattaaagagatgtttgaat |
119 |
Q |
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| T |
3157834 |
caaatataatttctttattttattttcaaaattcaagtaatattactggccaataaatgaacataaatcaataaataatatattaaagagatgtttgaat |
3157933 |
T |
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| Q |
120 |
ttatcttggtgaatataatttgaacccacgagccatcacagaaagtagaaatatcaacataatagagcaagaataa |
195 |
Q |
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| T |
3157934 |
ttatcttggtgaatataatttgaacccacgagccatcacagaaagtagaaatatcaacataatagagcaagaataa |
3158009 |
T |
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