View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_309 (Length: 227)

Name: NF8180A_low_309
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_309
NF8180A_low_309
[»] chr8 (1 HSPs)
chr8 (12-206)||(6647915-6648107)
[»] chr7 (3 HSPs)
chr7 (12-206)||(4469598-4469789)
chr7 (12-181)||(39669515-39669685)
chr7 (111-206)||(38691017-38691110)
[»] chr5 (1 HSPs)
chr5 (11-206)||(5254534-5254727)
[»] chr2 (1 HSPs)
chr2 (12-206)||(13859644-13859836)
[»] chr1 (4 HSPs)
chr1 (111-206)||(20133853-20133947)
chr1 (12-181)||(24523691-24523860)
chr1 (11-89)||(20142132-20142209)
chr1 (43-93)||(20133787-20133837)
[»] scaffold0136 (1 HSPs)
scaffold0136 (16-181)||(40717-40879)
[»] chr6 (2 HSPs)
chr6 (43-93)||(11144106-11144156)
chr6 (111-206)||(11144177-11144274)
[»] chr4 (2 HSPs)
chr4 (12-93)||(3993294-3993375)
chr4 (111-141)||(3993395-3993425)
[»] chr3 (1 HSPs)
chr3 (43-206)||(7551419-7551581)
[»] scaffold0416 (1 HSPs)
scaffold0416 (43-93)||(4368-4418)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 6648107 - 6647915
Alignment:
Q  12 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnng 111  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||  ||||||||||||||||                 |    
T  6648107 atggacatcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgatccccata--ttttttttagtttttg 6648010  T
Q  112 ttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 206  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6648009 ttaactatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacatcatctaacgtttgtct 6647915  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 4469598 - 4469789
Alignment:
Q  12 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnng 111  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||  |||||||| |||||||                 |    
T  4469598 atggacatcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgaaccccatatgattttttgttttt--g 4469695  T
Q  112 ttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 206  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4469696 ttaactatgtttttctaaacaaacttttgc-taaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 4469789  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 39669685 - 39669515
Alignment:
Q  12 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaataagaacaccgatccccata-nnnnnnnnnnnnnnnnn 110  Q
    |||||||||||||||| |||||||       |||||||||||||| ||||||||||||||||||  ||||||||||||||||                      
T  39669685 atggacatcatagtttattttctatttttttggtagtgctattttttctatttatttggcaatataaacaccgatccccatatgatttttttttgttttt 39669586  T
Q  111 gttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaag 181  Q
    |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  39669585 gttaactatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaag 39669515  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 38691017 - 38691110
Alignment:
Q  111 gttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 206  Q
    ||||||||||||||||||||||||||||||          |||||||||||||||||||| ||||||||  |||||| ||||||||||||||||||    
T  38691017 gttaactatgtttttctaaacaaacttttgttgaaaaaaattctcattaaatttgtgccaacaaagaaa--aaaaaaactcatctaacgtttgtct 38691110  T

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Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 5254727 - 5254534
Alignment:
Q  11 gatggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnn 110  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||  |||| |||||||||||                     
T  5254727 gatggacatcatagtttgttttctattttttttgtagtgctattttctctatttatttggtaatataaacaacgatccccatatgtttttttgttttt-- 5254630  T
Q  111 gttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 206  Q
    |||||||||||||||||||| ||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5254629 gttaactatgtttttctaaagaaacttttgctaaaaaaatttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 5254534  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 13859836 - 13859644
Alignment:
Q  12 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnng 111  Q
    ||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||  ||||| ||||||||||                 |    
T  13859836 atggacatcatagtttgttttctatttttttggtagtgctattttctatatttatttggcaatataaacactgatccccatattttttttagttttt--g 13859739  T
Q  112 ttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 206  Q
    |||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13859738 ttaactatgtttttgtaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatataacgtttgtct 13859644  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 20133853 - 20133947
Alignment:
Q  111 gttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 206  Q
    |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20133853 gttaactatgtttttctaaacaaacttttgctaaaaaaatttctcattaaatttgtgccaccaaagaaaa-aaaaaacctcatctaacgtttgtct 20133947  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 24523691 - 24523860
Alignment:
Q  12 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnng 111  Q
    |||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||  ||||||||||||||||                 |    
T  24523691 atggacgtcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgatccccatatgtttttttttgtttttg 24523790  T
Q  112 ttaactatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaag 181  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  24523791 ttaactatgtttttctaaacaaacttttgctaaaaaagattctcattaaatttgtgccaccaaagaaaag 24523860  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 20142132 - 20142209
Alignment:
Q  11 gatggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaataagaacaccgatccc 89  Q
    |||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||  ||||| ||||||    
T  20142132 gatggacatcatagtttgttttctatttttttggtagtgctatttt-tctatttatttggcaatataaacacggatccc 20142209  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 20133787 - 20133837
Alignment:
Q  43 ggtagtgctattttctctatttatttggcaataagaacaccgatccccata 93  Q
    |||||||||||||||||||||||||||| ||||  | ||||||||||||||    
T  20133787 ggtagtgctattttctctatttatttggaaatataatcaccgatccccata 20133837  T

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Target: scaffold0136 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 40717 - 40879
Alignment:
Q  16 acatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnngttaa 115  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||  ||||||||||| ||||                 |||||    
T  40717 acatcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgatcctcata---ttttatttttttttgttaa 40813  T
Q  116 ctatgtttttctaaacaaacttttgccnnnnnnnnttctcattaaatttgtgccaccaaagaaaag 181  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  40814 ctatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaag 40879  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 11144106 - 11144156
Alignment:
Q  43 ggtagtgctattttctctatttatttggcaataagaacaccgatccccata 93  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  11144106 ggtagtgctattttctctatttatttggcaatataaacaccgatccccata 11144156  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 11144177 - 11144274
Alignment:
Q  111 gttaactatgtttttctaaacaaacttttgccnnnnnnnn--ttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 206  Q
    |||||||||||||||||||||||||||||||           |||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||    
T  11144177 gttaactatgtttttctaaacaaacttttgcaaaaaaaaaaattctcattaaatttataccactaaagaaaagaaaaaatctcatctaacgtttgtct 11144274  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 3993294 - 3993375
Alignment:
Q  12 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaataagaacaccgatccccata 93  Q
    ||||||||||||||||||||||||        |||| |||||||||||||||||||| ||||||  ||||||||||||||||    
T  3993294 atggacatcatagtttgttttctatttttttcgtagcgctattttctctatttatttagcaatataaacaccgatccccata 3993375  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 3993395 - 3993425
Alignment:
Q  111 gttaactatgtttttctaaacaaacttttgc 141  Q
    |||||||||||||||||||||||||||||||    
T  3993395 gttaactatgtttttctaaacaaacttttgc 3993425  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 7551581 - 7551419
Alignment:
Q  43 ggtagtgctattttctctatttatttggcaataagaacaccgatccccatannnnnnnnnnnnnnnnngttaactatgtttttctaaacaaacttttgcc 142  Q
    ||||||| |||||||||||||||||||||||||  | ||||||||||||||                 ||||||||||||||||||||||||||||||||    
T  7551581 ggtagtgttattttctctatttatttggcaatataaccaccgatccccata-tgttttttttgtttttgttaactatgtttttctaaacaaacttttgcc 7551483  T
Q  143 --nnnnnnnnttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtct 206  Q
              |||||||||||||||||||| ||||||||  ||||||  |||||||||||||||||    
T  7551482 aaaaaaaaaattctcattaaatttgtgccaacaaagaaa--aaaaaatatcatctaacgtttgtct 7551419  T

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Target: scaffold0416 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 4368 - 4418
Alignment:
Q  43 ggtagtgctattttctctatttatttggcaataagaacaccgatccccata 93  Q
    ||||||| |||||||||||||||||||||||||  | ||||||||||||||    
T  4368 ggtagtgttattttctctatttatttggcaatataaccaccgatccccata 4418  T

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