View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_310 (Length: 227)
Name: NF8180A_low_310
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_310 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 3429197 - 3429010
Alignment:
| Q |
18 |
accaacattcttggctacccctgtagttttgtccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatgaa |
117 |
Q |
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| T |
3429197 |
accaacattcttggctacccctgtagttttttccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatgaa |
3429098 |
T |
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| Q |
118 |
ggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtagatactagtggtaggtg |
205 |
Q |
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| T |
3429097 |
ggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtagatactagtggtaggtg |
3429010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 3425717 - 3425544
Alignment:
| Q |
19 |
ccaacattcttggctacccctgtagttttgtccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatga-- |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3425717 |
ccaacattcttggctacccctgtagttttgtccatcattaacaatgaaattgacaaccttgtacttgttccagctacttccacttcacaagaaaatgaag |
3425618 |
T |
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| Q |
117 |
-aggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtag |
189 |
Q |
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| T |
3425617 |
taggttcttgctcttcacaacatagacaatgattgtgtttcattacctagtttgttggtaaagtcatgtggtag |
3425544 |
T |
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