View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_318 (Length: 225)
Name: NF8180A_low_318
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_318 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 6785437 - 6785250
Alignment:
| Q |
23 |
atggacacatacaatgtttgaaagcaaaactcaacaacatgagaatgtctggttcatattctgggttagaatgtgaaggatcaattccctagtttccttc |
122 |
Q |
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| T |
6785437 |
atggacacatactatgtttgaaagcaaaactcaacaacatgagaatgtctggttcatattctgggttagaatgtgaaggatcaattccctagtttccttc |
6785338 |
T |
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| Q |
123 |
agttcttgatgcaaagttatctcgatggttttcattattatgccattcaactgcatttttcaaagtaaaatatatttatatgaattaa |
210 |
Q |
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| T |
6785337 |
agttcttgatgcaaagttatctcgatggttttcattattatgccattcaactgcatttttcaaagtaaaatatatttatatgatttaa |
6785250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 6798045 - 6797877
Alignment:
| Q |
29 |
acatacaatgtttgaaagcaaaactcaacaacatgagaatgtctggttcatattctgggttagaatgtgaaggatcaattccctagtttccttcagttct |
128 |
Q |
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| T |
6798045 |
acatactatgtttgaaagtaaaactcattggcataagcatgtcagcttcatattctgcattagaatgtaaaggatcaactacctagatcccttcggttct |
6797946 |
T |
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| Q |
129 |
tgatgcaaagttatctcgatggttttcattattatgccattcaactgcatttttcaaagtaaaatatattt |
199 |
Q |
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| T |
6797945 |
tgatgccga--tgtctcgatggttttcataattatgcgattcaactgaatttttcaaagtaaaatatattt |
6797877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 6940587 - 6940630
Alignment:
| Q |
156 |
attattatgccattcaactgcatttttcaaagtaaaatatattt |
199 |
Q |
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| T |
6940587 |
attattatgccatccagctgcatttttcaaagtaaaataaattt |
6940630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 6774585 - 6774544
Alignment:
| Q |
156 |
attattatgccattcaactgcatttttcaaagtaaaatatat |
197 |
Q |
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| T |
6774585 |
attattatgccatccagcggcatttttcaaagtaaaatatat |
6774544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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