View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_327 (Length: 221)
Name: NF8180A_low_327
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_327 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 26324833 - 26325034
Alignment:
| Q |
18 |
aatatgaccacaatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaa-ataaccac |
116 |
Q |
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| T |
26324833 |
aatatgaccacaatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaaaataaccac |
26324932 |
T |
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| Q |
117 |
gtttcaaaataaacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataatgatgtccatctca |
216 |
Q |
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| T |
26324933 |
gtttcaaaataaacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataataatttccatctca |
26325032 |
T |
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| Q |
217 |
tt |
218 |
Q |
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|| |
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| T |
26325033 |
tt |
26325034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 48320906 - 48320850
Alignment:
| Q |
132 |
aactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctcttt |
189 |
Q |
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| T |
48320906 |
aactgaaacgacttcatgca-ttttcaaacggtaattaaccgccaattgcacctcttt |
48320850 |
T |
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