View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_33 (Length: 407)
Name: NF8180A_low_33
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 9 - 402
Target Start/End: Complemental strand, 27738278 - 27737881
Alignment:
| Q |
9 |
tggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagttttcaaagtactattacagaagtgtttgctttctgtgatttgaatcctt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27738278 |
tggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagttttcaaagtactattacagaagtgtttgctttctgtgatttgaatcctt |
27738179 |
T |
|
| Q |
109 |
caacgggacccaaagcctcaaaagagccaaagtttgcagagagggaaggcaatgacagagttgagttttgatttagcagaataggaatagatgagggcat |
208 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27738178 |
caacgggaccaaaagcctcaaaagagccaaagtttgcagagagggaaggcaatgacagagttgagttttgatttagcagaataggaatagatgagggcaa |
27738079 |
T |
|
| Q |
209 |
gaggcatgacttggacttggagttttcaagagtttgttcagagcatctgagccaaaagttaatgaacttttggcaggtgaagtgtgttgagtttttgaga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27738078 |
attgcatgacttggacttggagttttcaagagtttgttcagagcatctgagccaaaagttaatgaacttttggtaggtgaagtgtgttgagtttttgaga |
27737979 |
T |
|
| Q |
309 |
atttggagaattagagccaatagagccataaggctttgattgagaaaaggaatcatagaaaaacattttgat----agatagaaaatgagtacatact |
402 |
Q |
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| T |
27737978 |
atttggagaattagagccaatagagccataaggctttgattgagaaaaggaatcgtagaaaaacattttgatcaaaagatagaaaatgagtacatact |
27737881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 27726308 - 27726077
Alignment:
| Q |
9 |
tggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagttttcaaagtactattacagaagtgtttgctttctgtgatttgaatcctt |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
27726308 |
tggtgttgaaagtaagtaatagtactggtaccactgtagcacaattcaagttttcaaagtactattacagaagtgtttgctttttgtgatttggatcctt |
27726209 |
T |
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| Q |
109 |
caacgggacccaaagcctcaaaagagccaaagtttgcagagagggaaggcaatgacagagttgagttttgatttagcagaataggaatagatgagggcat |
208 |
Q |
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|||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
27726208 |
caacgggaccaaaagactcaaaa-agccaaagtttgcagagagggaaggcaatgacagagttgagttttgatttagcagaatgggaatagacgagggcat |
27726110 |
T |
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| Q |
209 |
gaggcatgacttggacttggagttttcaagagt |
241 |
Q |
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|||||||| ||||||||||||||| |||||||| |
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| T |
27726109 |
gaggcatggcttggacttggagttatcaagagt |
27726077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 402
Target Start/End: Original strand, 31822207 - 31822320
Alignment:
| Q |
293 |
tgttgagtttttgagaatttggagaattagagccaatagagccataaggctttgattgagaaaaggaatcatagaaaaacattttgat----agatagaa |
388 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
31822207 |
tgttgagtttatgagaatttggagaattagagccaaaagagccataatggtttgattgagaaaagaaatcatagaaaaacattttgatcaaaagatagaa |
31822306 |
T |
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| Q |
389 |
aatgagtacatact |
402 |
Q |
| |
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|||||||||||||| |
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| T |
31822307 |
aatgagtacatact |
31822320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 402
Target Start/End: Complemental strand, 36472648 - 36472552
Alignment:
| Q |
310 |
tttggagaattagagccaatagagccataaggctttgattgagaaaaggaatcatagaaaaacattttgat----agatagaaaatgagtacatact |
402 |
Q |
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|||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
36472648 |
tttggagaattaaagccaaaagagccgtaaggctttgattgacaaaaggaatcatagaaaaacattttgatcaaaagatggaaaatgagtacatact |
36472552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 21251130 - 21251186
Alignment:
| Q |
10 |
ggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagttttcaaa |
66 |
Q |
| |
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|||||| ||||||||||||||||||||||||| | || ||||||||||||||||||| |
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| T |
21251130 |
ggtgttataagtaagtaatagtactggtaccattaaagcacaattcaagttttcaaa |
21251186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 21250277 - 21250330
Alignment:
| Q |
9 |
tggtgttgtaagtaagtaatagtactggtaccactgaatcacaattcaagtttt |
62 |
Q |
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||||||||||||||||||||||||| ||||||| || | ||||||||||||||| |
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| T |
21250277 |
tggtgttgtaagtaagtaatagtaccggtaccattggagcacaattcaagtttt |
21250330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 30372093 - 30372021
Alignment:
| Q |
304 |
tgagaatttggagaattagagccaatagagccataaggctttgattgagaaaaggaatcatagaaaaacattt |
376 |
Q |
| |
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||||||||| ||||||| || ||| |||||||||||||||||||||||||||||| ||| | | |||||||| |
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| T |
30372093 |
tgagaatttagagaattggaaacaaaagagccataaggctttgattgagaaaaggattcacatagaaacattt |
30372021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 3072469 - 3072420
Alignment:
| Q |
20 |
gtaagtaatagtactggtaccactgaatcacaattcaagttttcaaagta |
69 |
Q |
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|||||||||||||||||||||| ||| ||||| | |||||||||||||| |
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| T |
3072469 |
gtaagtaatagtactggtaccatagaagcacaactgaagttttcaaagta |
3072420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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