View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_331 (Length: 220)

Name: NF8180A_low_331
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_331
NF8180A_low_331
[»] chr2 (2 HSPs)
chr2 (21-195)||(23784646-23784820)
chr2 (149-195)||(23767307-23767353)
[»] chr4 (1 HSPs)
chr4 (62-103)||(33498017-33498058)
[»] chr1 (1 HSPs)
chr1 (56-96)||(38021439-38021479)
[»] chr8 (2 HSPs)
chr8 (55-98)||(10449186-10449229)
chr8 (41-96)||(24863009-24863065)
[»] chr5 (1 HSPs)
chr5 (60-94)||(37064124-37064158)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 23784646 - 23784820
Alignment:
Q  21 atcgaaggcgggttcccttgaacgattcgtctatagtaaagttcattaaccacttaagctcaattgcttggttaatcaaaaacaaattttaccacacgag 120  Q
    |||||| | ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23784646 atcgaacgtgggttccgttgaacgattcgtctttagtaaagctcattaaccacttaagctcaattgcttggttaatcaaaaacaaattttaccacacgag 23784745  T
Q  121 cggtgcaaaagataaatgaaaaaagaagataaccttcaatttttccatgtgaaacgcagggttgattattcttct 195  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23784746 tagtgcaaaagataaatgaaaaaagaagataaccttcaatttttccatgtgaaacgcagggttgattattcttct 23784820  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 23767353 - 23767307
Alignment:
Q  149 ataaccttcaatttttccatgtgaaacgcagggttgattattcttct 195  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||    
T  23767353 ataaccttcaatttttccatgtgaaaagcagggttgattatccttct 23767307  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 33498017 - 33498058
Alignment:
Q  62 ttcattaaccacttaagctcaattgcttggttaatcaaaaac 103  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  33498017 ttcattaaccacttaagctcaattgtttggttaatctaaaac 33498058  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 38021479 - 38021439
Alignment:
Q  56 gtaaagttcattaaccacttaagctcaattgcttggttaat 96  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  38021479 gtaaagttcattaaccatttgagctcaattgcttggttaat 38021439  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 10449186 - 10449229
Alignment:
Q  55 agtaaagttcattaaccacttaagctcaattgcttggttaatca 98  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||    
T  10449186 agtaaagttcattaaccacttaaactcaattgtttggtttatca 10449229  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 24863009 - 24863065
Alignment:
Q  41 aacgattcgtctatag-taaagttcattaaccacttaagctcaattgcttggttaat 96  Q
    |||||||||||||| | || | ||||||||||||||||| ||||||| |||||||||    
T  24863009 aacgattcgtctattgatataattcattaaccacttaagttcaattgtttggttaat 24863065  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 37064124 - 37064158
Alignment:
Q  60 agttcattaaccacttaagctcaattgcttggtta 94  Q
    |||||||||||||||| ||||||||||||||||||    
T  37064124 agttcattaaccacttcagctcaattgcttggtta 37064158  T

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