View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_332 (Length: 220)
Name: NF8180A_low_332
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_332 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1482664 - 1482872
Alignment:
| Q |
1 |
agagcaaaaggaaaaggagatttgggctgagcttaatcatcttctgatgatttatagggttccaaaagcaaagaacttggtgatttttccaatctgctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482664 |
agagcaaaaggaaaaggagatttgggctgagcttaatcatcttctgatgatttatagggatccaaaagcaaagaacttggtgatttttccaatctgctta |
1482763 |
T |
|
| Q |
101 |
atcttctgcttgaagattaaagctgtatacattttagattttcccttgcatcaccattctttgatgattttgttgcaattttggtataatcttttgtata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1482764 |
atcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtata |
1482863 |
T |
|
| Q |
201 |
tattacaat |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
1482864 |
tattacaat |
1482872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 36717391 - 36717605
Alignment:
| Q |
1 |
agagcaaaaggaaaaggagatttgggctgagcttaatcatcttctgatgatttatagggttccaa------aagcaaagaacttggtgatttttccaatc |
94 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||| || |||| | |
|
|
| T |
36717391 |
agagcaaatgggaaaggagatttgggctgagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaacttggtgtttgatccagtt |
36717490 |
T |
|
| Q |
95 |
tgcttaatcttctgcttgaagattaaagctgtatacattttagattttcccttgcatcaccattctttgatgattttgttgcaattttggtataatcttt |
194 |
Q |
| |
|
|| ||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
36717491 |
tgtgtaatcttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatgattttgttgcaattttggtgtaatccat |
36717590 |
T |
|
| Q |
195 |
tgtatatattacaat |
209 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36717591 |
tgtatatattacaat |
36717605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 1483267 - 1483329
Alignment:
| Q |
109 |
cttgaagattaaagctgtatacattttagattttcccttgcatcaccattctttgatgatttt |
171 |
Q |
| |
|
||||||||||| || |||| |||||||| ||||| ||||||| || |||||| |||||||||| |
|
|
| T |
1483267 |
cttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
1483329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University