View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_335 (Length: 218)
Name: NF8180A_low_335
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_335 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 3645044 - 3644860
Alignment:
| Q |
14 |
ataaaataacaggtccaagtaaaccatggattgcagataatcttaaccaagggaggcttaatgattattactggcttttggctatgttgagtgctataaa |
113 |
Q |
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| T |
3645044 |
ataaaataacaggtccaagtaaaccatggattgcagataatcttaaccaagggaggcttaattattattactggcttttggctatgttgagtgctataaa |
3644945 |
T |
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| Q |
114 |
tttgatgatatacttggcttgtgcaaagtggtatgtgtacaaggataagaaggttgctgaggaaggtatggaagagtaaactgat |
198 |
Q |
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| T |
3644944 |
tttgatgatatacttggcttgtgcaaagtggtatgtgtacaaggataagaaggttgctgaggaaggcatggaagagtaaactgat |
3644860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 3655707 - 3655569
Alignment:
| Q |
25 |
ggtccaagtaaaccatggattgcagataatcttaaccaagggaggcttaatgattattactggcttttggctatgttgagtgctataaatttgatgatat |
124 |
Q |
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| T |
3655707 |
ggtccaaataaaccatggattgcggataatcttgatcaagggaggctctatgatttttattggctattggctatgctaagtgctataaatgtggtgatat |
3655608 |
T |
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| Q |
125 |
acttggcttgtgcaaagtggtatgtgtacaaggataaga |
163 |
Q |
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| T |
3655607 |
atttggcttgtgctaagtggtatgtgtacaaggacaaga |
3655569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 9572190 - 9572048
Alignment:
| Q |
18 |
aataacaggtccaagtaaaccatggattgcagataatcttaaccaagggaggcttaatgattattactggcttttggctatgttgagtgc------tata |
111 |
Q |
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| T |
9572190 |
aataacaggtccaagtaagccatggattacagattaccttaaccaagggaggctt-atgaccattcttggcttttgactttgttgagtgctgtaattata |
9572092 |
T |
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| Q |
112 |
aatttgatgatatacttggcttgtgcaaagtggtatgtgtacaa |
155 |
Q |
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| T |
9572091 |
aatttgctgatatatttggcttgagcaaagtggtatgtgtacaa |
9572048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 41876042 - 41876136
Alignment:
| Q |
85 |
tggcttttggctatgttgagtgctataaatttgatgatatacttggcttgtgcaaagtggtatgtgtacaaggataagaaggttgctgaggaagg |
179 |
Q |
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| T |
41876042 |
tggcttttggctttgttgagtgttttaaatttggtcatatacttgctttgtgctaattggtatgtttataaggataaaaggcttgctgaggaagg |
41876136 |
T |
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