View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_337 (Length: 217)

Name: NF8180A_low_337
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_337
NF8180A_low_337
[»] chr4 (5 HSPs)
chr4 (44-140)||(37180220-37180316)
chr4 (44-140)||(37189538-37189634)
chr4 (68-140)||(37181445-37181517)
chr4 (52-139)||(37187901-37187988)
chr4 (68-140)||(38704293-38704369)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 37180316 - 37180220
Alignment:
Q  44 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37180316 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37180220  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 37189538 - 37189634
Alignment:
Q  44 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 140  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37189538 catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37189634  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 37181445 - 37181517
Alignment:
Q  68 caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 140  Q
    ||||||||||||  ||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||||||||    
T  37181445 caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttg 37181517  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 37187988 - 37187901
Alignment:
Q  52 tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatctttt 139  Q
    |||||||||||  |  |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| ||||||||    
T  37187988 tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatctttt 37187901  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 38704369 - 38704293
Alignment:
Q  68 caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 140  Q
    ||||||||| ||||||||||    ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  38704369 caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttg 38704293  T

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