View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_338 (Length: 217)
Name: NF8180A_low_338
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_338 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 37179999 - 37180164
Alignment:
| Q |
52 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
151 |
Q |
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| T |
37179999 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
37180098 |
T |
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| Q |
152 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatg |
217 |
Q |
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| T |
37180099 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatg |
37180164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 37181738 - 37181573
Alignment:
| Q |
52 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
151 |
Q |
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| T |
37181738 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
37181639 |
T |
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| Q |
152 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatg |
217 |
Q |
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| T |
37181638 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatg |
37181573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 37189855 - 37189690
Alignment:
| Q |
52 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
151 |
Q |
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| T |
37189855 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
37189756 |
T |
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| Q |
152 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatg |
217 |
Q |
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| T |
37189755 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatg |
37189690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 37187682 - 37187847
Alignment:
| Q |
52 |
gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag |
151 |
Q |
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| T |
37187682 |
gaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaagtggtggcatagtgagtttaggcatagaag |
37187781 |
T |
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| Q |
152 |
ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatg |
217 |
Q |
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| T |
37187782 |
ggatagtaggcaatggaggaagatttccctgaggcatatttggaattgaaggcaaaggtggtaatg |
37187847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 38704220 - 38704268
Alignment:
| Q |
155 |
tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg |
203 |
Q |
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| T |
38704220 |
tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg |
38704268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 27096816 - 27096701
Alignment:
| Q |
67 |
aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg |
166 |
Q |
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| T |
27096816 |
aatggtggaaagttgagagatggaagtgttgga---ttggtaggaatgctaggaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatg |
27096720 |
T |
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| Q |
167 |
gaggaagatttccttgagg |
185 |
Q |
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| T |
27096719 |
gaggaacattaccttgagg |
27096701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 27103119 - 27103004
Alignment:
| Q |
67 |
aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg |
166 |
Q |
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| T |
27103119 |
aatggtggaaagttgagagatggaagtgttgga---ttggttggaatgctaggaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatg |
27103023 |
T |
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| Q |
167 |
gaggaagatttccttgagg |
185 |
Q |
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| T |
27103022 |
gaggaacattaccttgagg |
27103004 |
T |
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