View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_340 (Length: 217)
Name: NF8180A_low_340
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_340 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 25978870 - 25979043
Alignment:
| Q |
28 |
atcgagtttggtgttaaaaggcgagcacagcgaaatttggtcattgtatttgctttgcaattcctcaagtttctagttgaaatatacaaacaaaacatgc |
127 |
Q |
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| T |
25978870 |
atcgagttttgtgttcaaatgtgagcacagcgaaatttggtcattgtatttgctttgcaattcctcaagtttctagttgaaatatacaaacaaaacatgc |
25978969 |
T |
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| Q |
128 |
taagcataacagggaaaaggactaagccaaagtatcatcgaaatataatagccaacataatatacattctgatg |
201 |
Q |
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| T |
25978970 |
taagcataacagggaaaaggaccaagccaaagtatcatcgaaatataatagccaacataatataccttctgatg |
25979043 |
T |
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