View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_342 (Length: 216)

Name: NF8180A_low_342
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_342
NF8180A_low_342
[»] chr5 (2 HSPs)
chr5 (55-216)||(10820610-10820771)
chr5 (23-62)||(10820771-10820810)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 10820610 - 10820771
Alignment:
Q  55 agaaaagtgttgtaaaagctctcaatcattttccaaagccattgtcagtgattaatctctcaaatcttgatctactttctggtcgtcttccagttacata 154  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10820610 agaaaagtgttgtaaaagctctcaatcattttccaaagccattttcagtgattaatctctcaaatcttgatctactttctggtcgttttccagttacata 10820709  T
Q  155 cttgtatttctacaaaaaaccaaaactaggtaacctcaaatcttttgttaacaatcttaaaa 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10820710 cttgtatttctacaaaaaaccaaaactaggtaacttcaaatcttttgttaacaatcttaaaa 10820771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 10820810 - 10820771
Alignment:
Q  23 caaagggatagtaatgattaagtatttgtgctagaaaagt 62  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10820810 caaagggatagtaatgattaagtatttgtgctagagaagt 10820771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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