View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_345 (Length: 214)
Name: NF8180A_low_345
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_345 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 4818414 - 4818581
Alignment:
| Q |
32 |
tcaacaagaagagagtatccctacatattaaggaaactaaggttataaatggacaaacataaggaaagataaaataaagtgataagagatactgtggagc |
131 |
Q |
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| T |
4818414 |
tcaacaagaagagagtatccctacatattaaggaaactaaggttataaatggacaaacttaaggaaagataaaataaagtgataagagatacagtggagc |
4818513 |
T |
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| Q |
132 |
tgcaactacagcaatcagattatgaactcgtgataagaaaaatcgaagatttccagcctccaccagcc |
199 |
Q |
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| T |
4818514 |
tgcaactatagcaatcagattatgaactcgtgataagaaaaatcgaagatttccagcctccaccagcc |
4818581 |
T |
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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 4865360 - 4865444
Alignment:
| Q |
115 |
aagagatactgtggagctgcaactacagcaatcagattatgaactcgtgataagaaaaatcgaagatttccagcctccaccagcc |
199 |
Q |
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| T |
4865360 |
aagagatattgtggagctgcaactaaagcaatctgattatgaactcgtgataagaaaaaaagaagctttgcagcctccaccagcc |
4865444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 4811897 - 4811951
Alignment:
| Q |
115 |
aagagatactgtggagctgcaactacagcaatcagattatgaactcgtgataagaa |
170 |
Q |
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| T |
4811897 |
aagagatattgtggagctacaactaaagcaatctgatt-tgaactcgtgataagaa |
4811951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 4814480 - 4814530
Alignment:
| Q |
118 |
agatactgtggagctgcaactacagcaatcagattatgaactcgtgataag |
168 |
Q |
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| T |
4814480 |
agatactgtggagctacttctaaagcaatcagattatgaactcttgataag |
4814530 |
T |
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