View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_349 (Length: 212)

Name: NF8180A_low_349
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_349
NF8180A_low_349
[»] chr7 (15 HSPs)
chr7 (1-208)||(39931074-39931282)
chr7 (11-188)||(36363991-36364168)
chr7 (5-146)||(4937610-4937751)
chr7 (5-146)||(17721152-17721293)
chr7 (13-143)||(31423122-31423252)
chr7 (5-146)||(234920-235061)
chr7 (10-146)||(11276735-11276871)
chr7 (12-146)||(47877500-47877633)
chr7 (5-146)||(29968491-29968632)
chr7 (13-143)||(37255278-37255408)
chr7 (52-132)||(25018847-25018927)
chr7 (61-124)||(17504097-17504160)
chr7 (61-124)||(17549054-17549117)
chr7 (59-112)||(6335940-6335993)
chr7 (52-132)||(11341327-11341407)
[»] chr4 (21 HSPs)
chr4 (5-143)||(55725188-55725326)
chr4 (12-146)||(1828029-1828163)
chr4 (5-146)||(23642073-23642214)
chr4 (5-146)||(47419321-47419462)
chr4 (4-143)||(11586679-11586818)
chr4 (12-146)||(19755784-19755918)
chr4 (12-146)||(19783888-19784022)
chr4 (12-146)||(23647738-23647872)
chr4 (49-143)||(48312614-48312708)
chr4 (16-145)||(5789585-5789714)
chr4 (60-146)||(15740737-15740823)
chr4 (5-146)||(46146194-46146335)
chr4 (56-143)||(54482692-54482779)
chr4 (49-132)||(19162703-19162786)
chr4 (99-146)||(19735311-19735358)
chr4 (49-142)||(36183058-36183151)
chr4 (98-138)||(23657822-23657862)
chr4 (49-132)||(40688597-40688680)
chr4 (48-132)||(7099013-7099097)
chr4 (98-138)||(8935599-8935639)
chr4 (60-112)||(54685161-54685213)
[»] chr2 (10 HSPs)
chr2 (4-146)||(28253237-28253379)
chr2 (13-200)||(37445556-37445743)
chr2 (13-142)||(14440265-14440394)
chr2 (8-143)||(33515692-33515827)
chr2 (5-132)||(26146746-26146873)
chr2 (5-132)||(43310790-43310917)
chr2 (5-93)||(12646091-12646179)
chr2 (49-132)||(13416202-13416285)
chr2 (98-143)||(12646056-12646101)
chr2 (98-138)||(15018202-15018242)
[»] scaffold1350 (1 HSPs)
scaffold1350 (5-148)||(59-202)
[»] chr3 (14 HSPs)
chr3 (13-143)||(19891197-19891327)
chr3 (5-146)||(2364794-2364935)
chr3 (13-143)||(48569529-48569659)
chr3 (5-146)||(962645-962786)
chr3 (5-146)||(34332297-34332438)
chr3 (5-146)||(3141368-3141509)
chr3 (5-146)||(10323053-10323194)
chr3 (5-132)||(52250607-52250733)
chr3 (13-146)||(19919719-19919852)
chr3 (48-140)||(12341780-12341872)
chr3 (13-146)||(16179464-16179597)
chr3 (49-132)||(8130482-8130565)
chr3 (13-148)||(20531541-20531676)
chr3 (7-113)||(6825372-6825478)
[»] scaffold0034 (1 HSPs)
scaffold0034 (5-146)||(105325-105466)
[»] chr8 (15 HSPs)
chr8 (5-146)||(7924903-7925044)
chr8 (5-146)||(8300320-8300461)
chr8 (12-146)||(9923118-9923252)
chr8 (5-146)||(41664850-41664991)
chr8 (64-148)||(38046873-38046957)
chr8 (48-146)||(20824816-20824914)
chr8 (5-146)||(172521-172662)
chr8 (56-143)||(13879020-13879107)
chr8 (49-143)||(25090907-25091001)
chr8 (98-200)||(43283248-43283350)
chr8 (7-132)||(36492912-36493037)
chr8 (48-93)||(43271007-43271052)
chr8 (49-132)||(4310368-4310451)
chr8 (49-142)||(37165647-37165740)
chr8 (43-143)||(42177075-42177172)
[»] chr5 (23 HSPs)
chr5 (5-146)||(28535157-28535298)
chr5 (5-146)||(33170175-33170316)
chr5 (48-146)||(8299707-8299805)
chr5 (12-146)||(31642028-31642162)
chr5 (52-146)||(42928648-42928742)
chr5 (5-146)||(30731796-30731937)
chr5 (5-146)||(42514237-42514378)
chr5 (12-146)||(35983280-35983414)
chr5 (5-146)||(27116655-27116796)
chr5 (56-138)||(27796009-27796091)
chr5 (5-146)||(23238900-23239041)
chr5 (7-132)||(41590627-41590752)
chr5 (48-124)||(10780740-10780816)
chr5 (98-146)||(27165525-27165573)
chr5 (49-132)||(36256309-36256392)
chr5 (68-146)||(12825716-12825794)
chr5 (48-93)||(25856964-25857009)
chr5 (52-132)||(4297838-4297918)
chr5 (52-138)||(15862206-15862292)
chr5 (52-138)||(42039234-42039320)
chr5 (60-93)||(27165502-27165535)
chr5 (98-138)||(22094825-22094865)
chr5 (98-146)||(25856999-25857047)
[»] chr1 (4 HSPs)
chr1 (5-146)||(6051120-6051261)
chr1 (60-146)||(47622614-47622700)
chr1 (5-93)||(35541604-35541692)
chr1 (98-146)||(35541566-35541614)
[»] chr6 (20 HSPs)
chr6 (5-143)||(14372473-14372611)
chr6 (48-146)||(17605859-17605957)
chr6 (5-146)||(2554123-2554264)
chr6 (52-145)||(18682103-18682196)
chr6 (76-148)||(10922068-10922140)
chr6 (49-146)||(13938236-13938333)
chr6 (56-143)||(10576783-10576870)
chr6 (48-140)||(17577243-17577335)
chr6 (113-200)||(5041980-5042066)
chr6 (5-92)||(24766896-24766983)
chr6 (48-93)||(21629647-21629692)
chr6 (98-138)||(5085601-5085641)
chr6 (60-132)||(15602855-15602927)
chr6 (49-93)||(15956517-15956561)
chr6 (52-142)||(26514245-26514335)
chr6 (61-110)||(18588902-18588951)
chr6 (52-145)||(32186201-32186294)
chr6 (98-138)||(503107-503147)
chr6 (98-138)||(8264748-8264788)
chr6 (98-146)||(24767004-24767052)
[»] scaffold0472 (1 HSPs)
scaffold0472 (5-146)||(3769-3910)
[»] scaffold0026 (1 HSPs)
scaffold0026 (52-137)||(67606-67691)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 39931074 - 39931282
Alignment:
Q  1 gctctgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctgg 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39931074 gctctgttaggtaaatggtgttggcgtttgttagtggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggttgg 39931173  T
Q  101 aggatgggggccgaagttgttcttgttggtggtgggagatagtgagaaaccgggatggggttgaaggta-ggagtgatgggtggtttgcgtcgtgtgtgt 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  39931174 aggatgggggccggagttgttcttgttggtggtgggagatagtgagaattcgggatggggttgaaggtagggagtgatgggtggtttgtgtcgtgtgtgt 39931273  T
Q  200 ctttttggt 208  Q
    |||||||||    
T  39931274 ctttttggt 39931282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 36364168 - 36363991
Alignment:
Q  11 gtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatggggg 110  Q
    |||||||||||||||||||||||| ||||||| ||| |||| || ||||||||||||||||||| || ||||||||||||     | ||||||||| |||    
T  36364168 gtaaatggtgttggcgtttgttagtggagggtaatggtttggggcgtagggtgttggtggctagttaaggtgtggaggataaatagttggaggatgaggg 36364069  T
Q  111 ccgaagttgttcttgttggtggtgggagatagtgagaaaccgggatggggttgaaggtaggagtgatgggtggtttgc 188  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||    
T  36364068 ccgaagttgttcttcttgatggagggagatagtgagaatccgggatggggtaggaggtagtggtgatgggtggtttgc 36363991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 4937610 - 4937751
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  4937610 tgttgggtaaatggtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 4937709  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  4937710 tgggggccggagttgttcttcgtggtggagggagattgtgag 4937751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 17721293 - 17721152
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||||| ||||||  ||||   || | ||||||| | | |||||||||||||||||||||||||| ||||||  |  |||||||    
T  17721293 tgttgggtaaatggtgttggcggttgttattggagaaggaagctttgtggagaaaggtgttggtggctaggtatggtgtggcggatggaggtttggagga 17721194  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| |||||||||||||    
T  17721193 tgggggccggagttgttcttcatggtggagggagatagtgag 17721152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 31423252 - 31423122
Alignment:
Q  13 aaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    |||||||||||||| |||||||  ||  | |||| ||||||| |||||||||||||||||||| ||||||||| ||||||  |  |||||||||||||||    
T  31423252 aaatggtgttggcggttgttagttgatagggatggtttgtggcgtagggtgttggtggctaggcatggtgtggcggatggtggtttggaggatgggggcc 31423153  T
Q  113 gaagttgttcttgttggtggtgggagatagt 143  Q
    | ||||||||||  |||| | ||||||||||    
T  31423152 ggagttgttcttcgtggttgagggagatagt 31423122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 234920 - 235061
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  |||| | || | ||||||| | | |||||| ||||||||||||||||||| ||||||  |  |||||||    
T  234920 tgttgggtaaatggtgttggtggttgttattggagagagaagctttgtggcgaaaggtgttagtggctaggtatggtgtggcggatggaggtttggagga 235019  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| |||||||||||||    
T  235020 tgggggccggagttgttcttcgtggtggagggagatagtgag 235061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 11276735 - 11276871
Alignment:
Q  10 ggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggg 109  Q
    ||||||||||||||||| ||||||  |||| | || | ||||||| | | |||||| ||||||||||||||||||| ||||||  |  ||||||||||||    
T  11276735 ggtaaatggtgttggcggttgttattggagagggaagctttgtggagaaaggtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggg 11276834  T
Q  110 gccgaagttgttcttgttggtggtgggagatagtgag 146  Q
     ||| |||||||| |  |||||| |||||||||||||    
T  11276835 cccggagttgttcgtcgtggtggagggagatagtgag 11276871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 47877633 - 47877500
Alignment:
Q  12 taaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggc 111  Q
    ||||||||||||||| ||||||  |||| | || | ||||||| |   |||||||||||||||||||||||||| ||||||  |  |||||||| |||||    
T  47877633 taaatggtgttggcggttgttattggagagggaagctttgtggcgacaggtgttggtggctaggtatggtgtggcggatggaggtttggaggat-ggggc 47877535  T
Q  112 cgaagttgttcttgttggtggtgggagatagtgag 146  Q
    || ||||||||||  |||||| |||||||||||||    
T  47877534 cggagttgttcttcgtggtggagggagatagtgag 47877500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 29968632 - 29968491
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||||| ||||||  |||| | || | ||||||| | | |||||| |||||||||||||| |||| ||||||  |  |||||||    
T  29968632 tgttgggtaaatggtgttggcggttgttattggagagggaagctttgtggagaaaggtgttagtggctaggtatggcgtggcggatggaggtttggagga 29968533  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    || |||||| |||||||| |  |||||| |||||||||||||    
T  29968532 tgcgggccggagttgttcgtcgtggtggagggagatagtgag 29968491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 37255408 - 37255278
Alignment:
Q  13 aaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    ||||| |||||||| |||||||  ||  | |||| |||| || |||||||||||||||||||||||||||||| ||||||  |  ||||||||||||||     
T  37255408 aaatgatgttggcggttgttagttgatagggatggtttggggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggct 37255309  T
Q  113 gaagttgttcttgttggtggtgggagatagt 143  Q
    | |||||||| |  || ||| ||||||||||    
T  37255308 ggagttgttcatcgtgatggagggagatagt 37255278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 25018847 - 25018927
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    |||| ||||||||||||||| || ||||||| ||||| |||| || |||||| |||||| |||||| |||||| |||||||    
T  25018847 tggtatagggtgttggtggcaagatatggtgaggaggctgggaggttggaggttgggggtcgaagtggttcttcttggtgg 25018927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 17504097 - 17504160
Alignment:
Q  61 gtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttctt 124  Q
    ||||||||||| || || |||| |||||||||| || |||||||||||||||| ||| ||||||    
T  17504097 gtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccggagtggttctt 17504160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 17549117 - 17549054
Alignment:
Q  61 gtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttctt 124  Q
    ||||||||||| || || |||| |||||||||| || |||||||||||||||| ||| ||||||    
T  17549117 gtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccggagtggttctt 17549054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 6335940 - 6335993
Alignment:
Q  59 gggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    |||||||||| |||||||||||||||   |||||| || |||||||||||||||    
T  6335940 gggtgttggttgctaggtatggtgtgcgcgatgggaggttggaggatgggggcc 6335993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 11341407 - 11341327
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    |||| |||||||||||  ||||||||||||| |||||  ||| || ||||||  |||||||| |||||||| | |||||||    
T  11341407 tggtatagggtgttggctgctaggtatggtgaggaggcagggaggttggaggtcgggggccggagttgttccttttggtgg 11341327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 55725188 - 55725326
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| |||||||||||| | |||||||  ||  | ||||  || |||| ||||||||||||||||||||||||||||||||||||  |  |||||||    
T  55725188 tgttagggaaatggtgttggaggttgttagtagatagagatggattatggtatagggtgttggtggctaggtatggtgtggaggatggtggtttggagga 55725287  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagt 143  Q
    ||||||||| |||||||||| ||||||| ||||||||||    
T  55725288 tgggggccggagttgttcttcttggtggagggagatagt 55725326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 1828029 - 1828163
Alignment:
Q  12 taaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggc 111  Q
    ||||||||||||||| ||||||  ||||   |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  ||| ||||||||||    
T  1828029 taaatggtgttggcggttgttattggagaaggatgttttgtggaggaaggtgttagtggctaggtatggtgtggaggatggaggtttggcggatgggggc 1828128  T
Q  112 cgaagttgttcttgttggtggtgggagatagtgag 146  Q
    || |||||||||| ||||||| |||||||||||||    
T  1828129 cggagttgttcttcttggtggcgggagatagtgag 1828163  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 23642073 - 23642214
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  23642073 tgttgggtaaatggtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 23642172  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  23642173 tgggggccggagttgttcttcgtggtggagggagattgtgag 23642214  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 47419462 - 47419321
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||||||||||||||||||| | |||||   |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  47419462 tgttaggtaaatggtgttggaggttgttgttggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 47419363  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  47419362 tgggggccggagttgttcttcgtggtggagggagattgtgag 47419321  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 11586679 - 11586818
Alignment:
Q  4 ctgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagg 103  Q
    |||||||| |||||||||||||| |||||||  ||    || |  |||||||||| |||||| ||||||||||||||||||| ||||||  |  |||||     
T  11586679 ctgttaggaaaatggtgttggcggttgttagttgataaggaagggttgtggtgtaaggtgttagtggctaggtatggtgtggcggatggaggtttggaga 11586778  T
Q  104 atgggggccgaagttgttcttgttggtggtgggagatagt 143  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  11586779 atgggggccgaagttgttcttcttggtggagggagatagt 11586818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 19755918 - 19755784
Alignment:
Q  12 taaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggc 111  Q
    ||||||||||||||| ||||||  |||| | || | ||||||| | | |||||| ||||||||||||||||||| ||||||  |  ||||||||||||||    
T  19755918 taaatggtgttggcggttgttattggagagggaagctttgtggaggaaggtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggc 19755819  T
Q  112 cgaagttgttcttgttggtggtgggagatagtgag 146  Q
    || ||||||||||  |||||| |||||||||||||    
T  19755818 cggagttgttcttcgtggtggagggagatagtgag 19755784  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 19783888 - 19784022
Alignment:
Q  12 taaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggc 111  Q
    ||||||||||||||| ||||||  |||| | || | ||||||| | | |||||| ||||||||||||||||||| ||||||  |  ||||||||||||||    
T  19783888 taaatggtgttggcggttgttattggagagggaagctttgtggaggaaggtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggc 19783987  T
Q  112 cgaagttgttcttgttggtggtgggagatagtgag 146  Q
    || ||||||||||  |||||| |||||||||||||    
T  19783988 cggagttgttcttcgtggtggagggagatagtgag 19784022  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 23647738 - 23647872
Alignment:
Q  12 taaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggc 111  Q
    ||||||||||||| | ||||||  |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  ||||||||||||||    
T  23647738 taaatggtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggc 23647837  T
Q  112 cgaagttgttcttgttggtggtgggagatagtgag 146  Q
    || ||||||||||  |||||| ||||||| |||||    
T  23647838 cggagttgttcttcgtggtggagggagattgtgag 23647872  T

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Target: chr4; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 48312708 - 48312614
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 143  Q
    |||||| |||||||||||||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||||||    
T  48312708 ttgtggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccggagttgttcttcgtggtggagggagatagt 48312614  T

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Target: chr4; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 5789585 - 5789714
Alignment:
Q  16 tggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaa 115  Q
    ||||||||| | |||||||  ||| |||| |  |||||| ||| |||||| |||||||||||||||||||||| |||  |  |||||||||||||||| |    
T  5789585 tggtgttggaggttgttagtagagagtgaagggttgtggcgtaaggtgttagtggctaggtatggtgtggagggtggaggtttggaggatgggggccgga 5789684  T
Q  116 gttgttcttgttggtggtgggagatagtga 145  Q
    ||||||||| ||||||| ||||||| ||||    
T  5789685 gttgttcttcttggtggcgggagattgtga 5789714  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 15740823 - 15740737
Alignment:
Q  60 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    |||||| ||||||||||||||||||||||||||  |  ||| |||||||||||| ||||||||||  |||||| |||||||||||||    
T  15740823 ggtgttagtggctaggtatggtgtggaggatggaggtttggcggatgggggccggagttgttcttcatggtggcgggagatagtgag 15740737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 46146335 - 46146194
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| |||||||||||  | |||||||  ||| | ||||  |||||| ||||||||||||||||||| |||||||  | ||||||  |  ||||| |    
T  46146335 tgttaggaaaatggtgttgaaggttgttagtagagagagatgggttgtggcgtagggtgttggtggctagatatggtgcagcggatggtggtttggagaa 46146236  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| |||||||| | ||||||| |||||||||||||    
T  46146235 tgggggccggagttgttcatcttggtggcgggagatagtgag 46146194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 54482692 - 54482779
Alignment:
Q  56 gtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 143  Q
    ||||||||||||||||||||||||||||||  |||||  |  ||||||||||||| || ||||||||||  |||||| ||||||||||    
T  54482692 gtagggtgttggtggctaggtatggtgtggcagatggtggtttggaggatgggggtcggagttgttcttcgtggtggagggagatagt 54482779  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 19162703 - 19162786
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    ||||||| |||||||||||| ||||| ||||||||   ||| ||| || |||||||||||||||| ||| |||||| |||||||    
T  19162703 ttgtggtatagggtgttggttgctagatatggtgttagggacgggaggttggaggatgggggccggagtggttctttttggtgg 19162786  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 19735311 - 19735358
Alignment:
Q  99 ggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  19735311 ggaggatgggggccggagttgttcttcttggtggcgggagatagtgag 19735358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 36183151 - 36183058
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatag 142  Q
    ||||||| ||||||  | ||||| || ||||||| ||||||||||||| |||||| ||||||||| |||  ||||  ||||||| |||||||||    
T  36183151 ttgtggtatagggtacttgtggcaagatatggtgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatag 36183058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 23657862 - 23657822
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  23657862 tggaggatgggggccgaagttgttcttcttggtggcgggag 23657822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 40688680 - 40688597
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    ||||||| | |||||||||| | ||| ||||||||   ||||||| || |||||||||||||||| ||| |||||| |||||||    
T  40688680 ttgtggtatcgggtgttggttggtagatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 40688597  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 7099097 - 7099013
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    |||||||| | |||| ||| | ||||| ||||||| |||||||| | || |||||||||||||||| ||| |||||  |||||||    
T  7099097 tttgtggtatcgggttttgatagctagatatggtgaggaggatgagaggttggaggatgggggccggagtggttctatttggtgg 7099013  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 8935639 - 8935599
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  8935639 tggaggatgggggccggagttgttcttcttggtggcgggag 8935599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 54685213 - 54685161
Alignment:
Q  60 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    ||||||||| |||||||||||||||   |||||| || |||||||||||||||    
T  54685213 ggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggatgggggcc 54685161  T

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Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 28253379 - 28253237
Alignment:
Q  4 ctgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagg 103  Q
    |||||||| |||||||||||||||||||||| |||| | || |  || ||| ||| |||||||  ||||||||||||||||| ||||||  |  ||||||    
T  28253379 ctgttaggaaaatggtgttggcgtttgttagtggagagggaagggttatggcgtaaggtgttgagggctaggtatggtgtggcggatggaggtttggagg 28253280  T
Q  104 atgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  28253279 atgggggccggagttgttcttcttggtggagggagatagtgag 28253237  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 37445743 - 37445556
Alignment:
Q  13 aaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    ||||||||||||||| ||||||  ||  ||||||  || ||| ||||||||||||||||||||||||||| ||||||  || || |||||||||||||||    
T  37445743 aaatggtgttggcgtctgttagttgatagtgatgggttctggcgtagggtgttggtggctaggtatggtgcggaggacaggaggttggaggatgggggcc 37445644  T
Q  113 gaagttgttcttgttggtggtgggagatagtgagaaaccgggatggggttgaaggtaggagtgatgggtggtttgcgtcgtgtgtgtc 200  Q
    | ||||||||||  ||||||||||||   |||||||  ||||| ||| |   ||||||  |||||||||||||| ||  |||||||||    
T  37445643 ggagttgttcttcgtggtggtgggagtgtgtgagaattcgggacgggataagaggtagtggtgatgggtggtttacggagtgtgtgtc 37445556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 14440394 - 14440265
Alignment:
Q  13 aaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    ||||||||||||||||||||||  ||  | | || ||||||||||||||||||| |||||||||||||| ||| ||||||  |  |||||||||||||||    
T  14440394 aaatggtgttggcgtttgttagttgataggggtggtttgtggtgtagggtgttgttggctaggtatggtatggcggatggtggtttggaggatgggggcc 14440295  T
Q  113 gaagttgttcttgttggtggtgggagatag 142  Q
    | ||||||||||  |||||| |||||||||    
T  14440294 ggagttgttcttcgtggtggagggagatag 14440265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 33515692 - 33515827
Alignment:
Q  8 taggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgg 107  Q
    |||| ||||||||||| || |||||||  ||  | ||||  |||||| |||||||||||||||||||||||||||||| ||||||  |  ||||||||||    
T  33515692 tagggaaatggtgttgacggttgttagttgatagagatgggttgtggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgg 33515791  T
Q  108 gggccgaagttgttcttgttggtggtgggagatagt 143  Q
    ||| || || |||||||  |||||| ||||||||||    
T  33515792 gggtcggagctgttcttcgtggtggagggagatagt 33515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 26146873 - 26146746
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| |||||||||||||||||||| | |||| |   |  |||||||| ||||||||||||||| || ||||| | |||||||||| || ||||||     
T  26146873 tgttaggcaaatggtgttggcgtttgttggtggagaggagtagtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggt 26146774  T
Q  105 tgggggccgaagttgttcttgttggtgg 132  Q
    ||||||||| ||| ||| || |||||||    
T  26146773 tgggggccggagtggttattcttggtgg 26146746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 43310917 - 43310790
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| ||||||||||||||||| || | |||| |   |  |||||||| ||||||||||||||| || ||||| | |||||||||| || ||||||     
T  43310917 tgttaggcaaatggtgttggcgtttattggtggagaggagtagtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggt 43310818  T
Q  105 tgggggccgaagttgttcttgttggtgg 132  Q
    ||||||||| ||| |||||| |||||||    
T  43310817 tgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 12646179 - 12646091
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatggg 93  Q
    ||||||| |||||||||||| | |||||||  ||  | ||||  ||||||| ||||||||||||||||||||| |||||||||||||||    
T  12646179 tgttaggaaaatggtgttggaggttgttagtagatagagatggattgtggtatagggtgttggtggctaggtaaggtgtggaggatggg 12646091  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 13416285 - 13416202
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    ||||||| | |||||||||| |||||||||||||||   |||||| || |||||||||||||||| ||| |||||  |||||||    
T  13416285 ttgtggtatcgggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggatgggggccggagtggttctatttggtgg 13416202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 12646101 - 12646056
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggagatagt 143  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||    
T  12646101 tggaggatgggggccggagttgttcttcttggtggagggagatagt 12646056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 15018242 - 15018202
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    |||||| |||||||||||||||||||| ||||||| |||||    
T  15018242 tggaggttgggggccgaagttgttcttcttggtggcgggag 15018202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 202 - 59
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| |||||||||||| | |||||||  ||  | ||||  |||||| ||| ||||||||||| |||||||||||||||||||||  |  |||||||    
T  202 tgttagggaaatggtgttggaggttgttagtagatagagatggattgtggcgtaaggtgttggtggttaggtatggtgtggaggatggtggtttggagga 103  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgagaa 148  Q
    ||||||||||||||| |||| ||||||| |||||||||| ||||    
T  102 tgggggccgaagttgctcttcttggtggagggagatagtcagaa 59  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 19891327 - 19891197
Alignment:
Q  13 aaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    |||||||||||||| |||||||  ||  | | || ||||||| ||||||||||||||||||||||||||||||  |||||  |  |||||||||||||||    
T  19891327 aaatggtgttggcgattgttagttgatagggttggtttgtggcgtagggtgttggtggctaggtatggtgtggcagatggtggtttggaggatgggggcc 19891228  T
Q  113 gaagttgttcttgttggtggtgggagatagt 143  Q
    ||||||||||||  |||||| ||||||||||    
T  19891227 gaagttgttcttcgtggtggagggagatagt 19891197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 2364935 - 2364794
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  2364935 tgttgggtaaatggtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 2364836  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  2364835 tgggggccggagttgttcttcgtggtggagggagattgtgag 2364794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 48569529 - 48569659
Alignment:
Q  13 aaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    |||||||||||||| |||||||  ||  | ||||  |||||| |||||||||||||||||||||||||||||| ||||||  |  |||||||||||||||    
T  48569529 aaatggtgttggcggttgttagttgatagagatgggttgtggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggcc 48569628  T
Q  113 gaagttgttcttgttggtggtgggagatagt 143  Q
    |||| |||||||  |||| | ||||||||||    
T  48569629 gaagctgttcttcgtggtagagggagatagt 48569659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 962645 - 962786
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| |||||||||||| | |||||||  ||| | ||||  |||||| |||||||||| |||||||||||||||| || ||||||  |  |||||||    
T  962645 tgttaggaaaatggtgttggaggttgttagtagagagagatgggttgtggcgtagggtgttagtggctaggtatggtggggcggatggtggtttggagga 962744  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    |||||| || |||||||| | ||||||| |||||||||||||    
T  962745 tgggggtcggagttgttcatcttggtggagggagatagtgag 962786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 34332297 - 34332438
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||||| ||||||  |||| | || | ||||||| | | |||||| ||||||||||||||||||| ||||||  |  |||||||    
T  34332297 tgttgggtaaatggtgttggcggttgttattggagagggaggctttgtggagaaaggtgttagtggctaggtatggtgtggcggatggaggtttggagga 34332396  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||| | ||||||||||  |||||| |||||||||||||    
T  34332397 tgggggcgggagttgttcttcgtggtggagggagatagtgag 34332438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 3141509 - 3141368
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| |||||||||||| | |||||||  ||| | ||||  |||||| |||||||||| |||||||||||||||| || ||||||     |||||||    
T  3141509 tgttaggaaaatggtgttggaggttgttagtagagagagatgggttgtggcgtagggtgttagtggctaggtatggtgcggcggatggtgatttggagga 3141410  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| | |||||| | ||||||| |||||||||||||    
T  3141409 tgggggccggaattgttcatcttggtggcgggagatagtgag 3141368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 10323053 - 10323194
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | |||||   |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  10323053 tgttgggtaaatggtgttggaggttgttgttggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 10323152  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| |||| |||||  |||||| ||||||| |||||    
T  10323153 tgggggccggagttattcttcgtggtggagggagattgtgag 10323194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 52250607 - 52250733
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| |||||||||||||||||||| | |||| | |  | ||| |||| ||||||||||||||| || ||||||| |||||||||| || ||||||     
T  52250607 tgttagggaaatggtgttggcgtttgttggtggagagggtag-tttatggtatagggtgttggtggcgagatatggtgaggaggatgggaggttggaggt 52250705  T
Q  105 tgggggccgaagttgttcttgttggtgg 132  Q
    ||||||||| ||| |||||| |||||||    
T  52250706 tgggggccggagtggttcttcttggtgg 52250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 19919719 - 19919852
Alignment:
Q  13 aaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    |||||||||||| | ||||||  |||| | |||| ||||||| |   |||||| |||||||||||||||||||||||||   |  |||||||||||||||    
T  19919719 aaatggtgttggaggttgttattggagagggatgctttgtggagacaggtgttagtggctaggtatggtgtggaggatgacggtttggaggatgggggcc 19919818  T
Q  113 gaagttgttcttgttggtggtgggagatagtgag 146  Q
    | ||||||||||  |||||| ||||||| |||||    
T  19919819 ggagttgttcttcgtggtggagggagattgtgag 19919852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 12341780 - 12341872
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagat 140  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||  |  |||||||||||||||| ||||| ||||  |||||| |||||||    
T  12341780 tttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttggaggatgggggccggagttgctcttcgtggtggagggagat 12341872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 16179597 - 16179464
Alignment:
Q  13 aaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    |||||||||||| | |||||||  ||| |||| |  |||||| ||| |||||| ||||| ||||||||||| || | |||  |  |||||||||||||||    
T  16179597 aaatggtgttggaggttgttagtagagagtgaagggttgtggcgtaaggtgttagtggcgaggtatggtgtagacggtggaggtttggaggatgggggcc 16179498  T
Q  113 gaagttgttcttgttggtggtgggagatagtgag 146  Q
    | |||||||||| ||||||| ||||||| |||||    
T  16179497 ggagttgttcttcttggtggcgggagattgtgag 16179464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 8130565 - 8130482
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    ||||||| |||||||||||| |||||||||||||||   |||||| || |||||| ||||||||| ||| |||||| |||||||    
T  8130565 ttgtggtatagggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggttgggggccggagtggttctttttggtgg 8130482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 20531541 - 20531676
Alignment:
Q  13 aaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggcc 112  Q
    |||||||||||||||||||||   ||  | || | ||||||| ||| ||||||||| |||||||||| || |||||||||  |  |||| ||||||||      
T  20531541 aaatggtgttggcgtttgttaattgatagggaaggtttgtggcgtaaggtgttggtagctaggtatgctgcggaggatggaggtttggaagatgggggtt 20531640  T
Q  113 gaagttgttcttgttggtggtgggagatagtgagaa 148  Q
    | |||| ||||| ||||||| |||||||||||||||    
T  20531641 ggagttattcttcttggtggagggagatagtgagaa 20531676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 6825478 - 6825372
Alignment:
Q  7 ttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatg 106  Q
    ||||| |||||||||||||||||||| |  ||| |   |  ||| |||| |||||||||||||||  ||||||||| |||||||||| || ||| || ||    
T  6825478 ttaggcaaatggtgttggcgtttgttggttgagaggagtagtttatggtatagggtgttggtggcgcggtatggtgaggaggatgggaggttggcggttg 6825379  T
Q  107 ggggccg 113  Q
    |||||||    
T  6825378 ggggccg 6825372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 105325 - 105466
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  105325 tgttgggtaaatggtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 105424  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  105425 tgggggccggagttgttcttcgtggtggagggagattgtgag 105466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 7925044 - 7924903
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  7925044 tgttgggtaaatggtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 7924945  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  7924944 tgggggccggagttgttcttcgtggtggagggagattgtgag 7924903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 8300461 - 8300320
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  8300461 tgttgggtaaatggtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 8300362  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  8300361 tgggggccggagttgttcttcgtggtggagggagatcgtgag 8300320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 9923252 - 9923118
Alignment:
Q  12 taaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggc 111  Q
    ||||||||||||||| ||||||  ||||   || | ||||||| | | |||||||||||||||||||||||||| ||||||  |  ||||||||||||||    
T  9923252 taaatggtgttggcggttgttattggagaaggaagctttgtggagaaaggtgttggtggctaggtatggtgtggcggatggaggtttggaggatgggggc 9923153  T
Q  112 cgaagttgttcttgttggtggtgggagatagtgag 146  Q
    || ||||||||||  |||||| |||||||||||||    
T  9923152 cggagttgttcttcatggtggagggagatagtgag 9923118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 41664850 - 41664991
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||||| ||||||  |||| | || | ||||||| | | |||||| ||||||||||||||||||| ||||||  |  |||||||    
T  41664850 tgttgggtaaatggtgttggcggttgttattggagagggaggctttgtggaggaaggtgttagtggctaggtatggtgtggcggatggaggtttggagga 41664949  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  ||||||  ||||||||||||    
T  41664950 tgggggccggagttgttcttcgtggtggatggagatagtgag 41664991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 38046957 - 38046873
Alignment:
Q  64 ttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaa 148  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||  || ||| |||||||||| ||||    
T  38046957 ttggttgctaggtatggtgtggaggatgggaggttggaggatgggggccgaagttgttcttcgtgatggagggagatagttagaa 38046873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 20824914 - 20824816
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  20824914 tttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttggaggatgggggccggagttgttctttgtggtggagggagattgtgag 20824816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 172521 - 172662
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||| ||| | ||||||  |||| | ||||  |||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  172521 tgttgggtaaatggtgctggaggttgttattggagagggatgcgttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 172620  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  172621 tgggggccggagttgttcttcgtggtggagggagatcgtgag 172662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 13879020 - 13879107
Alignment:
Q  56 gtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 143  Q
    |||||||||||||||||||||||||||||| ||||||  |  |||||||||||||||  ||||||||||  |||||| ||||||||||    
T  13879020 gtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccagagttgttcttcgtggtggagggagatagt 13879107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 25091001 - 25090907
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 143  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||  |  |||||||||||||||| || |||||||  |||||| ||||||||||    
T  25091001 ttgtggcgtagggtgttggtggctatgtatggtgtggcggatggtggtttggaggatgggggccggagctgttcttcgtggtggagggagatagt 25090907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 43283248 - 43283350
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaaaccgggatggggttgaaggtaggagtgatgggtggtttgcgtcgtgtgt 197  Q
    ||||||||||  |||| |||||||||||||||||| |||||||||||||||   |||||| |||||  | |||   |||| |||||||||| ||||||||    
T  43283248 tggaggatggaagccggagttgttcttgttggtggagggagatagtgagaatttgggatgaggttggtgttagttatgataggtggtttgcttcgtgtgt 43283347  T
Q  198 gtc 200  Q
    |||    
T  43283348 gtc 43283350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 36493037 - 36492912
Alignment:
Q  7 ttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatg 106  Q
    ||||| |||||||||||||||||||| |  ||| |   |  ||| |||| ||||||||||||||| |||||||||| |||||||||| || ||| || ||    
T  36493037 ttaggcaaatggtgttggcgtttgttggttgagaggagtagtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttg 36492938  T
Q  107 ggggccgaagttgttcttgttggtgg 132  Q
    ||||||| ||  |||||| |||||||    
T  36492937 ggggccggagaggttcttcttggtgg 36492912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 43271052 - 43271007
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatggg 93  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||    
T  43271052 tttgtggtgtagggtgttgatggctaggtatggtgtggcggatggg 43271007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 4310368 - 4310451
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    ||||||| |||||||||||| ||||| |||| |||   ||||||| || |||||||||||||||| ||| |||||| |||||||    
T  4310368 ttgtggtatagggtgttggttgctagatatgatgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 4310451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 37165647 - 37165740
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatag 142  Q
    ||||||| ||||||  ||||||| || ||||| | ||||||||||||| |||||| ||||||||| |||  ||||  ||||||| |||||||||    
T  37165647 ttgtggtatagggtactggtggcgagatatggcgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatag 37165740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 42177075 - 42177172
Alignment:
Q  43 gatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatag 142  Q
    |||| ||||||| |||||||||||||||||||||||     ||  |||||  |  ||||||||| |||||||||||||||||  |||||| |||||||||    
T  42177075 gatggtttgtggcgtagggtgttggtggctaggtatca---ggcagatggtggtttggaggatgcgggccgaagttgttcttcgtggtggagggagatag 42177171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 28535157 - 28535298
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||||| ||||||  ||||   || | ||||||| | | |||||||||||||||||||||||||| ||||||  |  |||||||    
T  28535157 tgttgggtaaatggtgttggcggttgttattggagaaggaagctttgtggagaaaggtgttggtggctaggtatggtgtggcggatggaggtttggagga 28535256  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| |||||||||||||    
T  28535257 tgggggccggagttgttcttcatggtggagggagatagtgag 28535298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 33170316 - 33170175
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| |||||||||||| | |||||||  ||| | ||||  |||||| |||||||||| |||||||||||||||| || ||||||  |  |||||||    
T  33170316 tgttaggaaaatggtgttggaggttgttagtagagagagatgggttgtggcgtagggtgttagtggctaggtatggtgcggcggatggtggtttggagga 33170217  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| |||||||| | ||||||| |||||||||||||    
T  33170216 tgggggccggagttgttcatcttggtggcgggagatagtgag 33170175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 8299707 - 8299805
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||  |  |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  8299707 tttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttggaggatgggggccggagttgttctttgtggtggagggagattgtgag 8299805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 31642162 - 31642028
Alignment:
Q  12 taaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggc 111  Q
    ||||||||||||||| ||||||  ||||   || | ||||||| | | ||||||||||||||| |||||||||| ||||||  |  ||||||||||||||    
T  31642162 taaatggtgttggcggttgttattggagaaggaagctttgtggagaaaggtgttggtggctagatatggtgtggcggatggaggtttggaggatgggggc 31642063  T
Q  112 cgaagttgttcttgttggtggtgggagatagtgag 146  Q
    || ||||||||||  |||||| |||||||||||||    
T  31642062 cggagttgttcttcatggtggcgggagatagtgag 31642028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 42928742 - 42928648
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    |||||||||||||||||||||||||||| ||||| ||||||  |  |||||||||||||||| ||||||||||  |||||| || ||||||||||    
T  42928742 tggtgtagggtgttggtggctaggtatgatgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggaggcagatagtgag 42928648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 30731796 - 30731937
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  |||| | |||| ||||||| |   ||| || ||||||||||||||||||||||||||  |  |||||||    
T  30731796 tgttgggtaaatggtgttggaggttgttattggagagggatgctttgtggagacaggtattagtggctaggtatggtgtggaggatggcggtttggagga 30731895  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  30731896 tgggggccggagttgttcttcatggtggagggagattgtgag 30731937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 42514378 - 42514237
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||| ||||||| | ||||||   ||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  42514378 tgttgggtaaattgtgttggaggttgttattagagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcagtttggagga 42514279  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  42514278 tgggggccggagttgttcttcgtggtggagggagattgtgag 42514237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 35983280 - 35983414
Alignment:
Q  12 taaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggc 111  Q
    ||||||||||||||| ||||||  ||||   || | ||||||| | | ||||||||||||||||||||||| || ||||||  |  ||||||||||||||    
T  35983280 taaatggtgttggcggttgttattggagaaggaagctttgtggagaaaggtgttggtggctaggtatggtgaggcggatggaggtttggaggatgggggc 35983379  T
Q  112 cgaagttgttcttgttggtggtgggagatagtgag 146  Q
    || ||||||||||  |||||| ||||||| |||||    
T  35983380 cggagttgttcttcgtggtggagggagattgtgag 35983414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 27116655 - 27116796
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  ||||   ||||  |||||| | | |||||| |||||||||||||| |||||||||||  |  |||||||    
T  27116655 tgttgggtaaatggtgttggaggttgttattggagcaggatgcgttgtggagaaaggtgttagtggctaggtatggcgtggaggatggcggtttggagga 27116754  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  27116755 tgggggccggagttgttcttcgtggtggagggagatcgtgag 27116796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 27796091 - 27796009
Alignment:
Q  56 gtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    |||||||||||||||||||||||||||||| ||||||  |  |||||||||||||||  ||||||||||  |||||| |||||    
T  27796091 gtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccagagttgttcttcgtggtggagggag 27796009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 23239041 - 23238900
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| |||||||||||||| || ||||||  |||| | ||   ||||||| | | |||||| ||||||||||||||||||| ||||||  |  ||||||     
T  23239041 tgttgggtaaatggtgttgacggttgttattggagagggaatctttgtggagaaaggtgttagtggctaggtatggtgtggcggatggaggtttggaggt 23238942  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| |||||||| |  |||||| |||||||||||||    
T  23238941 tgggggccggagttgttcgtcgtggtggagggagatagtgag 23238900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 41590752 - 41590627
Alignment:
Q  7 ttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatg 106  Q
    ||||| |||||||||||||||||||| |  ||| |   |  ||| |||| ||||||||||||||| |||||||||| |||||||||| || ||| || ||    
T  41590752 ttaggcaaatggtgttggcgtttgttggttgagaggagtactttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttg 41590653  T
Q  107 ggggccgaagttgttcttgttggtgg 132  Q
    ||||||| ||  |||||| |||||||    
T  41590652 ggggccggagaggttcttcttggtgg 41590627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 10780816 - 10780740
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttctt 124  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||||||  |  |||||||||||||||| ||||| ||||    
T  10780816 tttgtggagtagggtgttgttggctaggtatggagtggcggatggtggtttggaggatgggggccggagttgctctt 10780740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 27165525 - 27165573
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  27165525 tggaggatgggggccgaagttgttcttcttggtggagggagataatgag 27165573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 36256392 - 36256309
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    ||||||| |||||||||||| | ||| ||||||||   ||||||| || |||||||||||||||| ||| |||||| |||||||    
T  36256392 ttgtggtatagggtgttggttgttagatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 36256309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 12825794 - 12825716
Alignment:
Q  68 tggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    |||||||||||||||||||||||||  |  ||||||||||||| |  ||||||||||  |||||| ||||||| |||||    
T  12825794 tggctaggtatggtgtggaggatggcagtttggaggatgggggtcagagttgttcttcgtggtggagggagattgtgag 12825716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 25856964 - 25857009
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatggg 93  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  25856964 tttgtggagtagggtgttgttggctaggtatggcgtggaggatggg 25857009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 4297838 - 4297918
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    |||| ||||||||||||||| |||||||||| |||||||||| || ||| || ||||| ||| ||  |||||| |||||||    
T  4297838 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcccggagaggttcttcttggtgg 4297918  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 15862206 - 15862292
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    |||| |||||||||| | |||||||||||||  |||| ||||||| |||||| ||||||  | |||||||| | ||||||| |||||    
T  15862206 tggtatagggtgttgattgctaggtatggtgaagaggctgggcggttggaggttgggggatggagttgttcgtattggtggagggag 15862292  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 42039234 - 42039320
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    |||| ||||||||||||||| |  ||||||| || || ||||||| |||||||||||||||| |||  || || ||||||| |||||    
T  42039234 tggtatagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtggagggag 42039320  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 27165502 - 27165535
Alignment:
Q  60 ggtgttggtggctaggtatggtgtggaggatggg 93  Q
    |||||||||||||||||||| |||||||||||||    
T  27165502 ggtgttggtggctaggtatgttgtggaggatggg 27165535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 22094825 - 22094865
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    |||||||||||||||||||||||||||  |||||| |||||    
T  22094825 tggaggatgggggccgaagttgttcttcgtggtggcgggag 22094865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 25856999 - 25857047
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  25856999 tggaggatgggggccggagttgttctttgtggtggagggagattgtgag 25857047  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 6051261 - 6051120
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||| | ||||||  |||| | |||| ||||||| | | |||||| ||||||||||||||||||||||||||  |  |||||||    
T  6051261 tgttgggtaaatggtgttggaggttgttattggagcgggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggcggtttggagga 6051162  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| ||||||| |||||    
T  6051161 tgggggccggagttgttcttcgtggtggagggagattgtgag 6051120  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 47622614 - 47622700
Alignment:
Q  60 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    |||||||||||||||||||||||||| ||||||  |  |||||||| ||||||| |||||||||| ||||||| | |||||||||||    
T  47622614 ggtgttggtggctaggtatggtgtggtggatggaggtttggaggataggggccggagttgttcttcttggtggagagagatagtgag 47622700  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 35541692 - 35541604
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatggg 93  Q
    |||| ||||||||||||||| | ||||||  |||| | |||| ||||||| | | |||||| |||||||||||||||||||||||||||    
T  35541692 tgttgggtaaatggtgttggaggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtggaggatggg 35541604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 35541614 - 35541566
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    |||||||||||||||| ||||||||||  |||||| ||||||| |||||    
T  35541614 tggaggatgggggccggagttgttcttcgtggtggagggagatcgtgag 35541566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 14372473 - 14372611
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    ||||||| ||||||||| |||||||||||| |||| | || |  || ||| ||| |||||||||||||||||||||||||| ||| |   |  |||||||    
T  14372473 tgttaggaaaatggtgtaggcgtttgttagtggagagggaagggttatggcgtaaggtgttggtggctaggtatggtgtggcggacgaaagtttggagga 14372572  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagt 143  Q
    ||||||||| |||||||||| ||||||| ||||||||||    
T  14372573 tgggggccggagttgttcttcttggtggagggagatagt 14372611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 17605859 - 17605957
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||  |  |||||||||||||||| |||||||||| || |||| ||||||| |||||    
T  17605859 tttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttggaggatgggggccggagttgttcttctttgtggagggagattgtgag 17605957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 2554264 - 2554123
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||||  ||||||  |||| | || | ||||||| | | |||||| ||||||||||||||||||| ||||||  |  |||||||    
T  2554264 tgttgggtaaatggtgttggcagttgttattggagagggaagctttgtggagaaaggtgttagtggctaggtatggtgtggcggatggaggtttggagga 2554165  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| ||||||||||  |||||| |||||||| ||||    
T  2554164 tgggggccggagttgttcttcgtggtggagggagataatgag 2554123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 18682103 - 18682196
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtga 145  Q
    ||||||| |||||||||||| |||||||||  |||||||||  |  |||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  18682103 tggtgtaaggtgttggtggccaggtatggttcggaggatggaggtttggaggatgggggccggagttgttcttcttggtggcgggagatagtga 18682196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 10922140 - 10922068
Alignment:
Q  76 tatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgagaa 148  Q
    |||||||||||||||||  ||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  10922140 tatggtgtggaggatggaaggctgaaggatgggggccggagttgttcttcttggtggagggagatagtgagaa 10922068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 13938333 - 13938236
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    |||||| |||||||||| |||||||||||||||| || ||||||  |  |||||||||||||||| |||||||| | |||||||  ||||||||||||    
T  13938333 ttgtggcgtagggtgttagtggctaggtatggtgcggcggatggtggtttggaggatgggggccggagttgttcatcttggtggcaggagatagtgag 13938236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 10576783 - 10576870
Alignment:
Q  56 gtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagt 143  Q
    ||||||||||| |||||||||||||||||| ||||||  |  |||||||||||||||| ||||| ||||  |||||| ||||||||||    
T  10576783 gtagggtgttgttggctaggtatggtgtggcggatggtggtttggaggatgggggccggagttgctcttcgtggtggagggagatagt 10576870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 17577243 - 17577335
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagat 140  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||   |  |||||||||||||||  ||||||||||  |||||| |||||||    
T  17577243 tttgtggagtagggtgttgttggctaggtatggcgtggaggatgatggtttggaggatgggggccagagttgttctttgtggtggagggagat 17577335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 5042066 - 5041980
Alignment:
Q  113 gaagttgttcttgttggtggtgggagatagtgagaaaccgggatggggttgaaggtaggagtgatgggtggtttgcgtcgtgtgtgtc 200  Q
    |||||| ||||| ||||||| ||||||||||||||| ||| |||||||| ||||||||  |||| ||||||||||   ||||||||||    
T  5042066 gaagttattctttttggtggagggagatagtgagaatccgagatggggtagaaggtagtcgtga-gggtggtttgttgcgtgtgtgtc 5041980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 24766896 - 24766983
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgg 92  Q
    |||||||||||||||||||||| ||||||   ||  | || | ||||||| | | |||||||||||||||||||||||||| ||||||    
T  24766896 tgttaggtaaatggtgttggcggttgttactagatagggaagctttgtggcgaaaggtgttggtggctaggtatggtgtggcggatgg 24766983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 21629647 - 21629692
Alignment:
Q  48 tttgtggtgtagggtgttggtggctaggtatggtgtggaggatggg 93  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  21629647 tttgtggagtagggtgttgttggctaggtatggcgtggaggatggg 21629692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 5085601 - 5085641
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  5085601 tggaggatgggggccgaagttgttcttcttggtggcgggag 5085641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 15602927 - 15602855
Alignment:
Q  60 ggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtgg 132  Q
    ||||||||| |||||||||||||||   |||||| || |||||||||||||||| ||| |||||  |||||||    
T  15602927 ggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggatgggggccggagtggttctatttggtgg 15602855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 15956517 - 15956561
Alignment:
Q  49 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatggg 93  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||    
T  15956517 ttgtggcgtaaggtgttggtggctaggtatggtgtggcggatggg 15956561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 26514335 - 26514245
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatag 142  Q
    |||| ||| |||||||||||| ||||||||| |||||  ||| |  |||||| ||||||||| ||| |||||  ||||||| |||||||||    
T  26514335 tggtatagagtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggagtggttctatttggtggagggagatag 26514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 18588951 - 18588902
Alignment:
Q  61 gtgttggtggctaggtatggtgtggaggatgggcggctggaggatggggg 110  Q
    |||||||||||||| ||||||| |||||| ||| || |||||||||||||    
T  18588951 gtgttggtggctagatatggtgaggaggacgggaggttggaggatggggg 18588902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 32186294 - 32186201
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtgggagatagtga 145  Q
    |||| ||||||||||||||| || ||| ||| || || |||| || |||||| ||||||||| |||  ||||| ||||||| ||||| ||||||    
T  32186294 tggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccggagtgcttcttcttggtggagggaggtagtga 32186201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 503107 - 503147
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  503107 tggaggatgggggccggagttgttcttcttggtggcgggag 503147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 8264788 - 8264748
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggag 138  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  8264788 tggaggatgggggccggagttgttcttcttggtggcgggag 8264748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 24767004 - 24767052
Alignment:
Q  98 tggaggatgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||||||| || ||||||||||  |||||| |||||||||||||    
T  24767004 tggaggatgggggtcggagttgttcttcgtggtggagggagatagtgag 24767052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 3910 - 3769
Alignment:
Q  5 tgttaggtaaatggtgttggcgtttgttaggggagggtgatgatttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggagga 104  Q
    |||| ||||||||||||||||| ||||||  |||| | |||| ||||||| | | |||||| ||||||||||||||||||  ||||||  |  ||||||     
T  3910 tgttgggtaaatggtgttggcggttgttattggagagggatgctttgtggagaaaggtgttagtggctaggtatggtgtgacggatggaggtttggaggt 3811  T
Q  105 tgggggccgaagttgttcttgttggtggtgggagatagtgag 146  Q
    ||||||||| |||||||| |  |||||| |||||||||||||    
T  3810 tgggggccggagttgttcgtcgtggtggagggagatagtgag 3769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 67691 - 67606
Alignment:
Q  52 tggtgtagggtgttggtggctaggtatggtgtggaggatgggcggctggaggatgggggccgaagttgttcttgttggtggtggga 137  Q
    |||| |||||||||| |  |||||||||||| |||||  ||| || |||||| ||||||| | ||| |||||| ||||||||||||    
T  67691 tggtatagggtgttgatttctaggtatggtgaggaggcagggaggttggaggttgggggctggagtggttcttcttggtggtggga 67606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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