View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_361 (Length: 207)
Name: NF8180A_low_361
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_361 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 54261340 - 54261173
Alignment:
| Q |
22 |
gaaacaagtaattaagagtttgatctttcaaacttttgctaatttcctttactcttataaattagtaaacaattgaactttgaatactgagaacacaaga |
121 |
Q |
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| T |
54261340 |
gaaacaagtaattaagagtttgatccttcaaacttttgctaatttcctttactcttataaattagtaaacaattgaactttgaatactgagaacacaaga |
54261241 |
T |
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| Q |
122 |
tatacgccctatctggataaacagcttaatttgcaattataacttatgcgcttatgtattagctattt |
189 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54261240 |
tatacgccctatatggataaacagcttaatttgcaattataacttatgcgcttatgtattagctattt |
54261173 |
T |
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