View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180A_low_365 (Length: 205)
Name: NF8180A_low_365
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_365 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 36748614 - 36748782
Alignment:
| Q |
18 |
tctccaataatatcttgtgagcaaattccattttctaatgatgtctttgcatatccattacttttcacatccattgaacttgaatctgttttcttctttt |
117 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36748614 |
tctccaacaatctcttgtgagcaaattccattttctgatgatgtctttgcatatccattacttttcacatccattgaacttgaacctgttttcttctttt |
36748713 |
T |
|
| Q |
118 |
ctccaaaaccatacagaacaaacacaaatgccaaactacaagccagaatccctccaagaatatactgat |
186 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36748714 |
ctccaaaaccatacacaacaaacacaaatgccaaactacaagccagaatccctccaagaatatactgat |
36748782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University