View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_374 (Length: 202)

Name: NF8180A_low_374
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_374
NF8180A_low_374
[»] chr5 (2 HSPs)
chr5 (15-187)||(4825195-4825367)
chr5 (38-155)||(34940275-34940392)
[»] chr8 (4 HSPs)
chr8 (27-163)||(31419527-31419663)
chr8 (64-165)||(31136060-31136161)
chr8 (120-161)||(9991333-9991374)
chr8 (63-165)||(19298005-19298107)
[»] chr7 (2 HSPs)
chr7 (64-161)||(31395393-31395490)
chr7 (121-165)||(23761420-23761464)
[»] chr3 (4 HSPs)
chr3 (70-161)||(12949699-12949790)
chr3 (99-162)||(53223110-53223173)
chr3 (111-156)||(11874258-11874303)
chr3 (120-165)||(36730486-36730531)
[»] chr2 (3 HSPs)
chr2 (120-165)||(18696806-18696851)
chr2 (108-161)||(40990937-40990990)
chr2 (75-147)||(5539918-5539990)
[»] chr1 (1 HSPs)
chr1 (64-161)||(11648736-11648833)
[»] scaffold0394 (1 HSPs)
scaffold0394 (106-165)||(3453-3512)
[»] chr4 (2 HSPs)
chr4 (120-154)||(27552512-27552546)
chr4 (63-165)||(54824720-54824822)
[»] chr6 (1 HSPs)
chr6 (108-161)||(9242938-9242991)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 4825367 - 4825195
Alignment:
Q  15 aaaaatattgcttctgaccctagtgttctcattgacaaagtgaagtttcactcatttttatggttgaaatcgcatcaggtgtcgtttacgtacagttatt 114  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4825367 aaaaatattgcttctgatcctagtgttctcattaacaaagtgaagtttcactcatttttatggttgaaatcgcatcaggtgtcgtttacgtacagttatt 4825268  T
Q  115 acgactggtggaaacacccgcttctttgtatgggagtccacatgtaattttattttgttgttttagtgatgtc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4825267 acgactggtggaaacacccgcttctttgtatgggagtccacatgtaattttattttgttgttttggtgatgtc 4825195  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 34940275 - 34940392
Alignment:
Q  38 tgttctcattgacaaagtgaagtttcactcatttttatggttgaaatcgcatcaggtgtcgtttacgtacagttattacgactggtggaaacacccgctt 137  Q
    ||||||||||||||| || ||| |  |||| || || |||||||||||  | ||||||||||| |  | |||||||||||| ||||| |||||  |||||    
T  34940275 tgttctcattgacaaggttaagctaaactctttcttgtggttgaaatcaaaacaggtgtcgttcaatttcagttattacgattggtgaaaacattcgctt 34940374  T
Q  138 ctttgtatgggagtccac 155  Q
    |||||| |||| ||||||    
T  34940375 ctttgtttgggtgtccac 34940392  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 31419527 - 31419663
Alignment:
Q  27 tctgaccctagtgttctcattgacaaagtgaagtttcactcatttttatggttgaaatcgcatcaggtgtcgtttacgtacagttattacgactggtgga 126  Q
    ||||| ||||| |||||||| ||||| |||||| |  |||| ||||||||||||||| |  || ||||||||||||  || | ||||||||| |||||||    
T  31419527 tctgatcctagcgttctcatcgacaaggtgaagctatactcctttttatggttgaaaacaaattaggtgtcgtttaattatacttattacgattggtgga 31419626  T
Q  127 aacacccgcttctttgtatgggagtccacatgtaatt 163  Q
    |||| |||||  |||||||||| |||| |||||||||    
T  31419627 aacatccgctcttttgtatgggtgtccgcatgtaatt 31419663  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 31136161 - 31136060
Alignment:
Q  64 actcatttttatggttgaaatcgcatcaggtgtcgtttacgtacagttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaatt 163  Q
    |||| ||||||||| |||||||  | |||||| | ||||  ||||||||| | || ||||||||| ||||||||||||||||||| |||| | |||||||    
T  31136161 actcttttttatggctgaaatcaaaacaggtgacttttagttacagttatcatgattggtggaaaaacccgcttctttgtatgggtgtccgcttgtaatt 31136062  T
Q  164 tt 165  Q
    ||    
T  31136061 tt 31136060  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 9991333 - 9991374
Alignment:
Q  120 tggtggaaacacccgcttctttgtatgggagtccacatgtaa 161  Q
    ||||||||||||||||||||||||||||| |||||| |||||    
T  9991333 tggtggaaacacccgcttctttgtatgggtgtccacttgtaa 9991374  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 19298005 - 19298107
Alignment:
Q  63 cactcatttttatggttgaaatcgcatcaggtgtcgtttacgtacagttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaat 162  Q
    ||||| ||||||||| |||||||| | ||| |||| ||||  ||||||||| | || ||||||||||| |||||| | || ||||| || ||| ||||||    
T  19298005 cactcctttttatggctgaaatcgaaacagatgtcatttagctacagttatcatgattggtggaaacatccgcttttgtgcatgggtgttcacttgtaat 19298104  T
Q  163 ttt 165  Q
    |||    
T  19298105 ttt 19298107  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 31395490 - 31395393
Alignment:
Q  64 actcatttttatggttgaaatcgcatcaggtgtcgtttacgtacagttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaa 161  Q
    |||| ||||||||| |||||||  | |||| | | ||||  ||||| ||| |||| ||||||||||||||||||||||||||||| |||||| |||||    
T  31395490 actcttttttatggctgaaatcaaaacaggcgacatttagttacagctatcacgattggtggaaacacccgcttctttgtatgggtgtccacttgtaa 31395393  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 23761464 - 23761420
Alignment:
Q  121 ggtggaaacacccgcttctttgtatgggagtccacatgtaatttt 165  Q
    |||||||||| | ||| |||||||||||||||||| |||||||||    
T  23761464 ggtggaaacaactgctcctttgtatgggagtccacttgtaatttt 23761420  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 12949790 - 12949699
Alignment:
Q  70 ttttatggttgaaatcgcatcaggtgtcgtttacgtacagttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaa 161  Q
    ||||||||||||||||  | |||| | ||||||  ||||  ||| | || ||||||||||||||||||||||||||||| |||||| |||||    
T  12949790 ttttatggttgaaatcaaaacaggcgacgtttagctacaactatcatgattggtggaaacacccgcttctttgtatgggtgtccacttgtaa 12949699  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 53223173 - 53223110
Alignment:
Q  99 tttacgtacagttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaat 162  Q
    ||||| ||||| ||| | ||||||||||| || ||||||||||||||||| |||||| ||||||    
T  53223173 tttacttacagctatcatgactggtggaagcaaccgcttctttgtatgggcgtccacttgtaat 53223110  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 11874303 - 11874258
Alignment:
Q  111 tattacgactggtggaaacacccgcttctttgtatgggagtccaca 156  Q
    |||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  11874303 tattacgattggtggaaacatccgctcctttgtatgggtgtccaca 11874258  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 36730531 - 36730486
Alignment:
Q  120 tggtggaaacacccgcttctttgtatgggagtccacatgtaatttt 165  Q
    ||||||||| ||| ||||||||||||||| |||||| |||||||||    
T  36730531 tggtggaaaaacctgcttctttgtatgggtgtccacttgtaatttt 36730486  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 18696851 - 18696806
Alignment:
Q  120 tggtggaaacacccgcttctttgtatgggagtccacatgtaatttt 165  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||    
T  18696851 tggtggaaaaacccgcttctttgtatgggtgtccacttgtaatttt 18696806  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 40990937 - 40990990
Alignment:
Q  108 agttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaa 161  Q
    ||||||||||| ||||||||||| || || ||||||||||| ||||||||||||    
T  40990937 agttattacgattggtggaaacatccactcctttgtatgggtgtccacatgtaa 40990990  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 5539918 - 5539990
Alignment:
Q  75 tggttgaaatcgcatcaggtgtcgtttacgtacagttattacgactggtggaaacacccgcttctttgtatgg 147  Q
    |||||||||||  | |||||||| ||||  || | |||| | |||||||||||||| ||||||||||||||||    
T  5539918 tggttgaaatcaaaacaggtgtcctttagctataattatcatgactggtggaaacatccgcttctttgtatgg 5539990  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 11648833 - 11648736
Alignment:
Q  64 actcatttttatggttgaaatcgcatcaggtgtcgtttacgtacagttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaa 161  Q
    |||| |||||||||||||||||  |  ||| | ||||||  ||||||||| | || | ||||||||||| ||||||||||||||| |||||| |||||    
T  11648833 actcttttttatggttgaaatcaaaataggcgacgtttaactacagttatcatgattagtggaaacacctgcttctttgtatgggtgtccacttgtaa 11648736  T

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Target: scaffold0394 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 3453 - 3512
Alignment:
Q  106 acagttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaatttt 165  Q
    |||||||| | || |||||||||||||||||| | |||||||| |||||| |||||||||    
T  3453 acagttatcatgattggtggaaacacccgcttttgtgtatgggtgtccacttgtaatttt 3512  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 27552512 - 27552546
Alignment:
Q  120 tggtggaaacacccgcttctttgtatgggagtcca 154  Q
    ||||||||||||||||||| |||||||||||||||    
T  27552512 tggtggaaacacccgcttccttgtatgggagtcca 27552546  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 54824822 - 54824720
Alignment:
Q  63 cactcatttttatggttgaaatcgcatcaggtgtcgtttacgtacagttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaat 162  Q
    ||||| ||||||||| |||||||| | ||| |||| ||||  ||||||||| | || ||||||||||| |||||| | || ||||| || ||| ||||||    
T  54824822 cactcctttttatggctgaaatcgaaacagatgtcatttagctacagttatcatgattggtggaaacatccgcttttgtgcatgggtgttcacttgtaat 54824723  T
Q  163 ttt 165  Q
    |||    
T  54824722 ttt 54824720  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 9242991 - 9242938
Alignment:
Q  108 agttattacgactggtggaaacacccgcttctttgtatgggagtccacatgtaa 161  Q
    ||||||||||| ||||||||||| ||||| ||||||||| | |||||| |||||    
T  9242991 agttattacgattggtggaaacatccgctcctttgtatgagtgtccacgtgtaa 9242938  T

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