View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_376 (Length: 201)
Name: NF8180A_low_376
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_376 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 14354789 - 14354975
Alignment:
| Q |
14 |
ttcttgaggtcgaacatttttattatgtgacgattcacatatattttaagtattgcaatgtaggattagaagttgagaatagggcacatgcactgtcggt |
113 |
Q |
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| T |
14354789 |
ttcttgaggtcgaacatttttattatgtgacgattcacatatattttaagtattgcaatgtaggattagaagttgagaatagggcacatgcactgtcggt |
14354888 |
T |
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| Q |
114 |
gtaattatagtgaggtctaataaaaattgagtatttggtagttatttctgaaaagcggttataggataggcttagtgaggtctaata |
200 |
Q |
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| T |
14354889 |
gtaattatagtgaggtctaataaaaattgagtatttggtagttatttctgaaaagcggttataggataggcttagtgaggtctaata |
14354975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 8173192 - 8173362
Alignment:
| Q |
11 |
ttattcttgaggtcgaacatttttattatgtgacgattcacatatattttaagtattgcaatgtaggattagaagttgagaatagggc--acatgcactg |
108 |
Q |
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| T |
8173192 |
ttattgttgaggtcgaacatttttattatgtgacgattcacatatata---------gcaatgtaggattagaagttgagaataggggggacatgcactg |
8173282 |
T |
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| Q |
109 |
tcggtgtaattatagtgaggtctaataaaaattgagtatttggtagttatttctgaaaagcggttataggataggcttag |
188 |
Q |
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| T |
8173283 |
tcagtgtaattatagcgaggtctaataaaaattgagtatttggtagttatttctaaaaagtggttataggataggcttag |
8173362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 14354961 - 14355007
Alignment:
| Q |
121 |
tagtgaggtctaataaaaattgagtatttggtagttatttctgaaaa |
167 |
Q |
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| T |
14354961 |
tagtgaggtctaataaaaattgagtatttggtagttatttctgaaaa |
14355007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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