View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_39 (Length: 399)
Name: NF8180A_low_39
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26945995 - 26945776
Alignment:
| Q |
1 |
aatattcatgaaaatacttagttggtcacaaatgtttaaacattttatttggacacactaagtaaagttataaagnnnnnnngagcatactaatgtgtat |
100 |
Q |
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| T |
26945995 |
aatattcatgaaaatacttagttggtcacaaatgtttaaacattttatttggacacactaagtaaagttataaagaaaaaaagagtatactaatgtgtat |
26945896 |
T |
|
| Q |
101 |
ttttaaaatatttaaaaaatatatatttatatgtgtttgcgactaaatatttgtgataatgctagacttcctcaatattgatatacctgatagtatatgc |
200 |
Q |
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| T |
26945895 |
ttttaaaatatttaaaaaatatatatttatatgtgtttgcgactaaatatttgtgataatgctagacttcctcaatattgatatacctgatagtatatgc |
26945796 |
T |
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| Q |
201 |
tcctccaaaagcatcaagat |
220 |
Q |
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| T |
26945795 |
tcctctaaaagcattaagat |
26945776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 277 - 393
Target Start/End: Complemental strand, 26945508 - 26945392
Alignment:
| Q |
277 |
cacagcaagaagctcttctatatattggttttaaaaatcatgataatccaattagtctagttaaccagttttaaaattatttataaagctaaagagatta |
376 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26945508 |
cacagcaagaacctcttctatatattggttttaaaaatcatgataatccaattagtctagttaaccaattttaaaattatttataaagctaaagagatta |
26945409 |
T |
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| Q |
377 |
tagattaaagagaaatg |
393 |
Q |
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| T |
26945408 |
tagattaaagagaaatg |
26945392 |
T |
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