View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_45 (Length: 386)

Name: NF8180A_low_45
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_45
NF8180A_low_45
[»] chr1 (2 HSPs)
chr1 (2-384)||(523516-523898)
chr1 (234-292)||(37087224-37087282)
[»] chr2 (2 HSPs)
chr2 (232-301)||(28635647-28635716)
chr2 (239-327)||(34033132-34033219)
[»] chr3 (3 HSPs)
chr3 (239-322)||(39358556-39358639)
chr3 (145-219)||(41599661-41599735)
chr3 (266-299)||(26159554-26159587)
[»] chr5 (1 HSPs)
chr5 (232-295)||(6827328-6827391)
[»] chr4 (1 HSPs)
chr4 (239-294)||(39279608-39279663)
[»] chr7 (1 HSPs)
chr7 (239-284)||(28081979-28082024)


Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 2 - 384
Target Start/End: Original strand, 523516 - 523898
Alignment:
Q  2 ttattctattaaatttcaaaagctagtaagacaaacgtttagaagcacttatcacgaaccctttgttagtctcagtctcccaacaactttaacctgttct 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  523516 ttattctattaaatttcaaaagttagtaagacaaacgtttagaagcacttatcacgaaccctttgttagtctcagtctccctacaactttaacttgttct 523615  T
Q  102 tcttttgtcttggtaccatcaattgaaattgtcgatttgcatttccatctaaatcaacaaactcttcattctgagtcatgttggcgtagaattcactcaa 201  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  523616 tcttttgtcttggtaccaccaattgaaattgtcgatttgcatttccatctaaatcaacaaactcttcattctgagtcatgttggcgtagaattcactcaa 523715  T
Q  202 aaattacatagcttgttgagtcaaag-agcgacaagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctgccacc 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  523716 aaattacatagcttgttgagtcaaagtagcgacaagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagttagagtctgccacc 523815  T
Q  301 ataatagaactaccaaaagcctcatgaactaaaacttatacacatgattttccaaaggaagtgaatatgtcactacttcctctt 384  Q
    |||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  523816 ataatagaactacc-aaagcctcatgaactagaacttatatacatgattttccaaaggaagtgaatatgtcattacttcctctt 523898  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 37087224 - 37087282
Alignment:
Q  234 aagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagt 292  Q
    |||| ||||||||||||||||   ||||| |||||||||||| |||||||||| |||||    
T  37087224 aagtcctaaaacttgcatatcatgaataacatttgcactaaaatttgacaagttagagt 37087282  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 28635716 - 28635647
Alignment:
Q  232 acaagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctgccacca 301  Q
    |||||| ||||||||||||||||   ||||| ||||||||||||||||||||| | ||||||||||||||    
T  28635716 acaagtcctaaaacttgcatatcatgaataacatttgcactaaagtttgacaaattagagtctgccacca 28635647  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 34033219 - 34033132
Alignment:
Q  239 ctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctgccaccataatagaactaccaaaagcctcatga 327  Q
    |||||||||| || |||| ||||| ||||||||| ||||||||||||| ||||| || | | || || | ||||||||||| |||||||    
T  34033219 ctaaaacttg-atgtcgcgaataacatttgcactgaagtttgacaagttagagtatgtcgctatcatggcactaccaaaaggctcatga 34033132  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 39358639 - 39358556
Alignment:
Q  239 ctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctgccaccataatagaactaccaaaagcct 322  Q
    |||||||||||||||||  ||||| ||||||| | || |||||||||| ||||||||||||| | | ||  |||||||||||||    
T  39358639 ctaaaacttgcatatcgtgaataacatttgcattgaaatttgacaagttagagtctgccaccgttaaaggtctaccaaaagcct 39358556  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 41599661 - 41599735
Alignment:
Q  145 tccatctaaatcaacaaactcttcattctgagtcatgttggcgtagaattcactcaaaaattacatagcttgttg 219  Q
    |||| |||||||||||  ||| ||||| ||||||||||| |   || |||||| |||||||||||||||||||||    
T  41599661 tccaactaaatcaacattctcatcattttgagtcatgttagaccaggattcacacaaaaattacatagcttgttg 41599735  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 26159554 - 26159587
Alignment:
Q  266 ttgcactaaagtttgacaagtaagagtctgccac 299  Q
    ||||||||||||||||||||| ||||||||||||    
T  26159554 ttgcactaaagtttgacaagttagagtctgccac 26159587  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 6827391 - 6827328
Alignment:
Q  232 acaagtgctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtctg 295  Q
    |||||| ||||||||||||| ||   ||||| |||| |||||||||||||||||| ||||||||    
T  6827391 acaagtcctaaaacttgcatgtcatgaataacattttcactaaagtttgacaagttagagtctg 6827328  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 39279608 - 39279663
Alignment:
Q  239 ctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaagtaagagtct 294  Q
    ||||||||||||| ||   ||||| ||||||||||||||||||||||| |||||||    
T  39279608 ctaaaacttgcatgtcatgaataatatttgcactaaagtttgacaagttagagtct 39279663  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 28082024 - 28081979
Alignment:
Q  239 ctaaaacttgcatatcgcaaataaaatttgcactaaagtttgacaa 284  Q
    ||||||||||||||||| |||||| ||||||| |||| ||||||||    
T  28082024 ctaaaacttgcatatcgtaaataacatttgcattaaaatttgacaa 28081979  T

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