View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_49 (Length: 378)
Name: NF8180A_low_49
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 5 - 366
Target Start/End: Original strand, 48055129 - 48055490
Alignment:
| Q |
5 |
cacttatgtcataccatggtggtgactctttgatgtcttacttagaataccatcttagcttttgagatggtagcttcatccagtggtcaaccgattcatc |
104 |
Q |
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| T |
48055129 |
cacttatgtcataccatggtggtgactctttgatgtcttacttagaataccatcttagcttttgagatggtagcttcatccagtggtcaaccgattcatc |
48055228 |
T |
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| Q |
105 |
cagtggtctcgttatcatgagaagtcacaggactgtatttagcacctggtttctgttgtcaatattaagatgtgaagaacaaccaacaattgtgtatcca |
204 |
Q |
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| T |
48055229 |
cagtggtctcgttatcatgagaagtcacaggactgtatttagcacctggtttctgttgtcaatattaagatgtgaagaacaaccaacaattgtgtatcca |
48055328 |
T |
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| Q |
205 |
aataagcagatttggtcattttcatgcaatattacaatacaactgcagaccatgtggtattcatgaacaatttcattactaaacaagaagacatagatct |
304 |
Q |
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| T |
48055329 |
aataagcagatttggtcattttcatgcaatattacaatacaactgcagaccatgtggtattcatgaacaatttcattactaaacaagaagacatagatct |
48055428 |
T |
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| Q |
305 |
cacctaaccttgcttacttcaatatgggcatttctgcccaaaaccaattttcatttgatatt |
366 |
Q |
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| T |
48055429 |
cacctaaccttgcttacttcaatatgggcatttctgcccaaaaccaattttcatttgatatt |
48055490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 48042073 - 48042232
Alignment:
| Q |
177 |
tgaagaacaaccaacaattgtgtatccaaataagcagatttggtcattttcatgcaatattacaatacaactgcagaccatgtggtattcatgaacaatt |
276 |
Q |
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| T |
48042073 |
tgaagaacaactaacaattgtgtatccaaataagcagatctggtcattttcatgctaaattactttacaactgcagaccatgtggcatgcataaacaatt |
48042172 |
T |
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| Q |
277 |
tcattactaaacaagaagacatagatctcacctaaccttgcttacttcaatatgggcattt |
337 |
Q |
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| T |
48042173 |
ttaatagt-aacaagaagtcatatatctcacctaaccatgcttacttcaatatgggcattt |
48042232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 232 - 337
Target Start/End: Original strand, 48049915 - 48050020
Alignment:
| Q |
232 |
aatattacaatacaactgcagaccatgtggtattcatgaacaatttcattactaaacaagaagacatagatctcacctaaccttgcttacttcaatatgg |
331 |
Q |
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| T |
48049915 |
aatattacaatacaactgcagaccatgtggtatgcattaacattttcaatagtaaacaagaagacatatatctcacctaaccttgcttacttcaatatgg |
48050014 |
T |
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| Q |
332 |
gcattt |
337 |
Q |
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||||| |
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| T |
48050015 |
ccattt |
48050020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 48036500 - 48036538
Alignment:
| Q |
99 |
ttcatccagtggtctcgttatcatgagaagtcacaggac |
137 |
Q |
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| T |
48036500 |
ttcatccagtggtctcattatcatgagaagacacaggac |
48036538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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