View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_52 (Length: 371)
Name: NF8180A_low_52
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 4263836 - 4264171
Alignment:
| Q |
20 |
catcatagtcaactactaactaattcctaccaaaggtagtaacaactaactcaataatcaatcaattgaaaaataacttccgggtaagtggaaattgaac |
119 |
Q |
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| T |
4263836 |
catcatagtcaactactaactaattcctaccaaaggtagtaacaactaactcaataatcaatcaattgaaaaataacttccgggtaagtggaaattgaac |
4263935 |
T |
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| Q |
120 |
ctcaaaatcacattgaaatcatatatattnnnnnnnnngcaatattaatatagaagaaacagagaaa-----tgaaatgaacctggacaaaagagaagtt |
214 |
Q |
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| T |
4263936 |
ctcaaaatcacattgaaatcatatatattcaaaaataagcaatattaatatagaagaaacagagaaatgaaatgaaatgaacctggacaaaagagaagtt |
4264035 |
T |
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| Q |
215 |
tccaatacgaataacccttccattagcaactgccatggagtttgcaaatgggagagactcgtcacttgtgtatataaccccattttttataatgaaatca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4264036 |
tccaatacgaataacccttccattagcaactgccatggagtttgcaaatgggagagactcatcacttgtgtatataaccccattttttataatgaaatca |
4264135 |
T |
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| Q |
315 |
gctactaatggaagagtagactgtggaagcttcttc |
350 |
Q |
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| T |
4264136 |
gatactaatggaagagtagactgtggaagcttcttc |
4264171 |
T |
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