View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_54 (Length: 369)
Name: NF8180A_low_54
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_54 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 4 - 369
Target Start/End: Original strand, 40988060 - 40988425
Alignment:
| Q |
4 |
tcgaagaatatcaccaaccattgatcaatttaggtgctaatcggctccttgcaattgagtatgattcaagatcgaaatatgagaacttcaagagcaagcc |
103 |
Q |
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| T |
40988060 |
tcgaagacaatcaccaaccattgatcaatttaggtgctaatcggctccttgcaattgagtatgattcaagatcgaaatatgagaacttcaagagcaagcc |
40988159 |
T |
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| Q |
104 |
accccatgcatgactcatccctcacttttcttcgtgggaaaaaagtgcacatgaagcatataggtacaatgaaagaaaccttttgatgccaagtcttcca |
203 |
Q |
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| T |
40988160 |
accccatgcatgactcgtccctcacttttcttcgtgggaaaaaagtgcacatgaagcatataggtacaatgaaagaaaccttttgatgccaagtcttcca |
40988259 |
T |
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| Q |
204 |
tcatcttttggctaatctagtatcaggnnnnnnnattgacattggctgatgaaagaacaattttgtataaaatgccccattcttttgtatactaaaagac |
303 |
Q |
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| T |
40988260 |
tcatcttttggctaatctagtatcaggtttttttattgacattggctgatgaaagaacaattttgtataaaatgccccattcttttgtatactaaaagac |
40988359 |
T |
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| Q |
304 |
attccatttgtagattcactgcttcataattttcaagttcagattgtgtgtctgaaatttgattga |
369 |
Q |
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| T |
40988360 |
attccatttgtagattcactgcttcataattttcaagttcagattgtgtgtctgaaatttgattga |
40988425 |
T |
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