View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_55 (Length: 369)
Name: NF8180A_low_55
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 26 - 364
Target Start/End: Original strand, 35965390 - 35965728
Alignment:
| Q |
26 |
gtggtgaatattcgcggttaataggggagaggaccaaatatttaacaacttggactgtttatgagtctatggaactaaacaattcacgtagatgtctaga |
125 |
Q |
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| T |
35965390 |
gtggtgaatattcgcggttaataggggagaggaccaaatatttaacaacttggactgtttatgagtctatggaactaaacaatttacgtagatgtctaga |
35965489 |
T |
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| Q |
126 |
ttatgtgtcagaaaaacacaaacatttaggttagctgaaaataaacacacactttcagttgggtggttgagtccagctggaatagtaaatgtatgtttgg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35965490 |
ttatgtgtcagaaaaacacaaacatttaggttagctgaaaataaacacacactttcagttgggtggttgagtccagctggaatagtaaatgtatgtttgg |
35965589 |
T |
|
| Q |
226 |
tttcactttttattagtataattgattttgtatttagaattgattattaacacctaacttggagggtggtgggtcatctccttcctgctgaccaatgaga |
325 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35965590 |
tttcactttttgttagtataattgattttgtatttagaattgattataaacacctaacttggagggtggtgggtcatctccttcctgctgaccaatgaga |
35965689 |
T |
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| Q |
326 |
tttcaacgattataaattatagcttcgttctcaccacac |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
35965690 |
tttcaacgattataaattatagcttcgttctcaccacac |
35965728 |
T |
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