View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_59 (Length: 361)
Name: NF8180A_low_59
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 3036513 - 3036837
Alignment:
| Q |
17 |
tcagagtagcttacttgttcaagaacgacgcataaaatataagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036513 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
3036612 |
T |
|
| Q |
117 |
atgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgg |
216 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
3036613 |
atgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctgg |
3036712 |
T |
|
| Q |
217 |
gacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036713 |
gacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
3036812 |
T |
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| Q |
316 |
caaatgccaaagatgaggtatggtt |
340 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3036813 |
caaatgccaaagatgaggtatggtt |
3036837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 340
Target Start/End: Original strand, 16863270 - 16863584
Alignment:
| Q |
27 |
ttacttgttcaagaacgacgcataaaatataagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgggatttg |
126 |
Q |
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| T |
16863270 |
ttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagctttgaaggcatctaatggtggaagaggatctgtaggatatg |
16863369 |
T |
|
| Q |
127 |
gtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataa-gtgtcacgagctgggacactatc |
225 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||| |||||||| |||| | | |||| || || || ||||||| ||||||||||||||| |
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| T |
16863370 |
gtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagtgttgaatgctacaaagtgtcacaagctgggacactatc |
16863469 |
T |
|
| Q |
226 |
agaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaa |
325 |
Q |
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| ||||||||||| ||||||| | |||||||| | |||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16863470 |
aaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatggctcaatcatgtttgaacacaaatgccaa |
16863569 |
T |
|
| Q |
326 |
agatgaggtatggtt |
340 |
Q |
| |
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||||||||||||||| |
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| T |
16863570 |
agatgaggtatggtt |
16863584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 20528888 - 20529205
Alignment:
| Q |
21 |
agtagcttacttgttcaagaacgacgcataaaatataagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgg |
120 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||| | | || ||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
20528888 |
agtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaaggtttctaatggtggaagaggatctgtgg |
20528987 |
T |
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| Q |
121 |
gatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggaca |
220 |
Q |
| |
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||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| ||||| |||| || ||||||||||| |||| ||||| |
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| T |
20528988 |
gatatgggagaggaagagggcgttcaagcaa-agaggaagatgtggaggaagaattaaca-agatttagttgaatgcaataagtgtcacaagctaggaca |
20529085 |
T |
|
| Q |
221 |
ctatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaat |
320 |
Q |
| |
|
||||||||||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | ||| ||||||||| |||| ||||||||||| |
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| T |
20529086 |
ctatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctcatggctcaaacatgattgaacacaaat |
20529185 |
T |
|
| Q |
321 |
gccaaagatgaggtatggtt |
340 |
Q |
| |
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| |||||||||||||||||| |
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| T |
20529186 |
gtcaaagatgaggtatggtt |
20529205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 40613109 - 40612799
Alignment:
| Q |
18 |
cagagtagcttacttgttcaagaacgacgcataaaatataagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatcta |
117 |
Q |
| |
|
|||||||| |||||||||||||||| || ||| |||| | | |||||||| |||||| |||| ||||||||||||||||| ||||| | |||||| | |
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| T |
40613109 |
cagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagctttgaaggtttccaatggtgaaagaggtttcg |
40613010 |
T |
|
| Q |
118 |
tgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctggg |
217 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||||||||||| ||||||||| || | ||||||||| |||||||| | || |||| |
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| T |
40613009 |
tggggtatggtagaggaagaggacgttcaggtgctagaggaa------------gaatcaacaaagcaagtgttgagtgttttaagtgtcgcaagttggg |
40612922 |
T |
|
| Q |
218 |
acactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacaca |
317 |
Q |
| |
|
|||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| ||||| ||||| ||||| ||| |||||||| |
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| T |
40612921 |
acactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattacttcttatggcccaatcttgcttgaacaca |
40612822 |
T |
|
| Q |
318 |
aatgccaaagatgaggtatggtt |
340 |
Q |
| |
|
|| |||||||||||||||||||| |
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| T |
40612821 |
aacgccaaagatgaggtatggtt |
40612799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 152 - 340
Target Start/End: Original strand, 20542323 - 20542511
Alignment:
| Q |
152 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
251 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
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|
| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
252 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
340 |
Q |
| |
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||||| || | |||| | ||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
20542511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 20542213 - 20542289
Alignment:
| Q |
18 |
cagagtagcttacttgttcaagaacgacgcataaaatataagaatcaagaaattgatattgagcaagctttgaaggt |
94 |
Q |
| |
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|||||||| |||||||||||||||| |||||| |||| | |||||||||| ||||| |||| |||||||||||||| |
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|
| T |
20542213 |
cagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttgaaggt |
20542289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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