View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_63 (Length: 348)

Name: NF8180A_low_63
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_63
NF8180A_low_63
[»] chr6 (25 HSPs)
chr6 (10-342)||(4564416-4564748)
chr6 (10-271)||(4592936-4593199)
chr6 (11-246)||(4617728-4617963)
chr6 (20-246)||(4602504-4602730)
chr6 (169-246)||(4506718-4506795)
chr6 (164-246)||(3172597-3172679)
chr6 (17-246)||(4517030-4517259)
chr6 (158-246)||(4481543-4481631)
chr6 (169-246)||(4514315-4514392)
chr6 (174-246)||(4489555-4489627)
chr6 (173-246)||(4461988-4462061)
chr6 (157-246)||(4470652-4470741)
chr6 (157-248)||(4557974-4558065)
chr6 (157-244)||(4586485-4586572)
chr6 (166-248)||(4571830-4571912)
chr6 (157-242)||(4561353-4561438)
chr6 (157-242)||(4575157-4575242)
chr6 (209-245)||(4266358-4266394)
chr6 (15-66)||(4299195-4299246)
chr6 (157-248)||(4612910-4613001)
chr6 (169-246)||(4484033-4484111)
chr6 (182-248)||(4580915-4580981)
chr6 (17-66)||(4568753-4568802)
chr6 (168-240)||(4259354-4259426)
chr6 (166-222)||(4599028-4599084)
[»] scaffold0199 (1 HSPs)
scaffold0199 (24-246)||(183-405)
[»] chr8 (4 HSPs)
chr8 (24-246)||(1674946-1675168)
chr8 (178-246)||(20863037-20863105)
chr8 (15-66)||(20863217-20863268)
chr8 (182-244)||(16685482-16685544)
[»] chr3 (1 HSPs)
chr3 (10-241)||(1281819-1282050)
[»] scaffold0288 (1 HSPs)
scaffold0288 (28-240)||(2918-3130)
[»] chr5 (1 HSPs)
chr5 (209-244)||(24103903-24103938)


Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 4564416 - 4564748
Alignment:
Q  10 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaag 109  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4564416 agaggagagagcatttattacatcactctaaagttcatggaaagtattcaaaacaattgtagagtctccaagaactttatcagccgcatcaattacaaag 4564515  T
Q  110 tctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttcca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4564516 tctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaaccgaaagtttttcaaacctggaatccaatctacattagtttcca 4564615  T
Q  210 aatatccatttgttagatagctctcatctgcatatcaaaagtatcagttaatatcttgaaggttatacatacatccgtcaatacatgagtattttgtttt 309  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  4564616 aatatccatttgttagatagctctgatctgcatatcaaatgtatcagttaatatcttgaaggttatacatacatccgtacatacatgagtattttgtttt 4564715  T
Q  310 cgacaaaaacatacatatataataaggtattat 342  Q
    |||||||||||||||||||||||||||||||||    
T  4564716 cgacaaaaacatacatatataataaggtattat 4564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 4592936 - 4593199
Alignment:
Q  10 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |  | || ||||||||||| ||||||||||||||    
T  4592936 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatctttatcagccacatcaattacaaag 4593035  T
Q  110 tctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttcca 209  Q
    | ||||||||||||||||||||||||||||||||||  ||||   || ||||| || |||||||||||||||||||||||||||||||| ||||||||||    
T  4593036 tttaacataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatctactttagtttcca 4593135  T
Q  210 aatatccatttgttagatagctctcatctgcatatcaaaagtatc--agttaatatcttgaagg 271  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |  |||||||| ||||||||    
T  4593136 aatatccatttgttagataactctcatctgcatatcaaaagtagcaaagttaatagcttgaagg 4593199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 4617728 - 4617963
Alignment:
Q  11 gaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||     ||||  ||| ||  | || || |  || |    
T  4617728 gaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagtgtctttgttaactcgatctgcaacttctataaagaatt 4617827  T
Q  111 ctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaa 210  Q
    ||||||||||||||||||||| |||||||||||||  ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||    
T  4617828 ctaacataatatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagtttccaa 4617927  T
Q  211 atatccatttgttagatagctctcatctgcatatca 246  Q
    | |||||||||||||||| |||||||||||||||||    
T  4617928 acatccatttgttagataactctcatctgcatatca 4617963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 4602504 - 4602730
Alignment:
Q  20 gcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataa 119  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||| |  || | |||| ||    ||||  |  || |||| |||||    
T  4602504 gcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa 4602603  T
Q  120 tatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatt 219  Q
    ||||||||||||||||||||||||||  |||||  || ||||| || |||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  4602604 tatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt 4602703  T
Q  220 tgttagatagctctcatctgcatatca 246  Q
    ||||||||| || ||||||||||||||    
T  4602704 tgttagataactatcatctgcatatca 4602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 4506718 - 4506795
Alignment:
Q  169 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 246  Q
    ||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  4506718 aaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatca 4506795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 3172597 - 3172679
Alignment:
Q  164 aatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 246  Q
    |||| |||||||||||||||||||||||| || ||  |||| ||||||||||||||||||  ||| |||||||||||||||||    
T  3172597 aatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatca 3172679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 4517030 - 4517259
Alignment:
Q  17 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaaca 116  Q
    |||||||||||||||||| ||||||||||||   ||||||| |||||||| | |    || || ||||  |||| ||||| ||||| | ||| | || ||    
T  4517030 agagcatttattacatcattctcaagttcatcagaagtattgaaaacaatagaattagcttcatgaaccctatcggccgcttcaatgataaattttatca 4517129  T
Q  117 taatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatcc 216  Q
    | |||||||| ||||| || || || |||  ||||   |  ||||||| || |||||||  ||||||||||||||| || || ||||| |||||||||||    
T  4517130 ttatatcattaggatcagtagttcttataaagtcaggcaggtcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatcc 4517229  T
Q  217 atttgttagatagctctcatctgcatatca 246  Q
    |||||| | ||| |||||||||||||||||    
T  4517230 atttgtcaaataactctcatctgcatatca 4517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 4481543 - 4481631
Alignment:
Q  158 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 246  Q
    ||||| |||| |||||||||||||||||||||||| |||||  | |  ||||||||||||| ||||| ||| |||||||||||||||||    
T  4481543 tccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatca 4481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 4514392 - 4514315
Alignment:
Q  169 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 246  Q
    |||||||  ||||||||||||||| || || ||||| ||||||||||||||||| | ||| |||||||||||||||||    
T  4514392 aaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4514315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 4489627 - 4489555
Alignment:
Q  174 ttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 246  Q
    ||||||||||||||||||| || || ||||| ||||||| ||||| ||||||||  |||||||||||||||||    
T  4489627 ttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatca 4489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 4461988 - 4462061
Alignment:
Q  173 tttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 246  Q
    |||||||||||||||||||| || || | ||| || |||||||||| |||||||||  ||||||||||||||||    
T  4461988 tttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatca 4462061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 4470652 - 4470741
Alignment:
Q  157 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 246  Q
    |||||| ||||  ||||||||||||||||||||||| || || | | | || |||||||||| | ||||||| |||||||||||||||||    
T  4470652 atccttcaatctgaagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatca 4470741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 4557974 - 4558065
Alignment:
Q  157 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 248  Q
    |||||| | ||||||||| | ||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||| ||| |||||    
T  4557974 atccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatctacatgtcaaa 4558065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 4586485 - 4586572
Alignment:
Q  157 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 244  Q
    |||||||| ||||||||| | ||| |||||||| || || || ||||| ||||||||||| ||||| ||||| |||| ||||||||||    
T  4586485 atcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactcttatctgcatat 4586572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 4571830 - 4571912
Alignment:
Q  166 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 248  Q
    ||||||||| ||||  ||||| || || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||    
T  4571830 tcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatatcaaa 4571912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 4561353 - 4561438
Alignment:
Q  157 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 242  Q
    |||||| ||||  ||||||||||||||||| ||||| || || || || |||| |||| ||||||||||||  |||||||||||||    
T  4561353 atccttcaatctgaagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcat 4561438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 4575157 - 4575242
Alignment:
Q  157 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 242  Q
    |||||| ||||  ||||||||||||||||| ||||| || |  || || ||||||||| ||||||||||||  |||||||||||||    
T  4575157 atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcat 4575242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 4266394 - 4266358
Alignment:
Q  209 aaatatccatttgttagatagctctcatctgcatatc 245  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4266394 aaatatccatttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 4299246 - 4299195
Alignment:
Q  15 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 66  Q
    |||||||||| ||||||||||||||||||||||   ||||||| ||||||||    
T  4299246 agagagcattcattacatcactctcaagttcatcataagtattaaaaacaat 4299195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 4613001 - 4612910
Alignment:
Q  157 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 248  Q
    |||||| | ||||||||| | ||| ||| |||| || || || ||||| ||||||||||| ||||| ||||| ||||||||||||| |||||    
T  4613001 atccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcatgtcaaa 4612910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 4484111 - 4484033
Alignment:
Q  169 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttg-ttagatagctctcatctgcatatca 246  Q
    ||||||||||||| |||||| ||| ||||| | ||| ||||||||| |||||| ||||||| |||| || |||||||||    
T  4484111 aaagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatca 4484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 4580915 - 4580981
Alignment:
Q  182 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 248  Q
    |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||| | ||||||    
T  4580915 cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctgtacatcaaa 4580981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 4568753 - 4568802
Alignment:
Q  17 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 66  Q
    ||||| |||| |||||||||||||||||||||  ||||||| ||||||||    
T  4568753 agagcctttactacatcactctcaagttcattataagtattgaaaacaat 4568802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 4259426 - 4259354
Alignment:
Q  168 gaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 240  Q
    ||||||| ||||| || ||||  || ||||| || || |||| ||||||||||||||||||||||| ||||||    
T  4259426 gaaagttcttcaatccaggaacacagtctactttggtatccagatatccatttgttagatagctcttatctgc 4259354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 4599028 - 4599084
Alignment:
Q  166 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgt 222  Q
    ||||||||||| ||  || ||||| |||||||| ||||||||||||||||| |||||    
T  4599028 tcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatccgtttgt 4599084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 183 - 405
Alignment:
Q  24 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataatatc 123  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||  ||||||||| ||||||||||||||||||    
T  183 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 282  T
Q  124 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 223  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  283 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 382  T
Q  224 agatagctctcatctgcatatca 246  Q
    ||||  |||||||||||||||||    
T  383 agatgtctctcatctgcatatca 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 1674946 - 1675168
Alignment:
Q  24 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataatatc 123  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||  ||||||||| ||||||||||||||||||    
T  1674946 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 1675045  T
Q  124 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 223  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  1675046 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 1675145  T
Q  224 agatagctctcatctgcatatca 246  Q
    ||||  |||||||||||||||||    
T  1675146 agatgtctctcatctgcatatca 1675168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 20863105 - 20863037
Alignment:
Q  178 caaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 246  Q
    |||||||||||||| ||| || ||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  20863105 caaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctgtatatca 20863037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 20863268 - 20863217
Alignment:
Q  15 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 66  Q
    ||||| |||| || |||||||||||||| |||||||||||||| ||||||||    
T  20863268 agagaacattcataacatcactctcaagctcattgaaagtattgaaaacaat 20863217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 16685544 - 16685482
Alignment:
Q  182 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 244  Q
    |||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  16685544 cctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatat 16685482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 1281819 - 1282050
Alignment:
Q  10 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |  |||| |||| |||   ||||| |  ||     
T  1281819 agaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatctgccatttcaataaagaat 1281918  T
Q  110 tctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttcca 209  Q
    |||||||||||||| ||| ||||| |||||||||||  |||||  |||||||| || || || |||||||||||||||||||||||||| || |||||||    
T  1281919 tctaacataatatcgtttcgatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttcca 1282018  T
Q  210 aatatccatttgttagatagctctcatctgca 241  Q
    ||||||||||||||||||| ||||||||||||    
T  1282019 aatatccatttgttagataactctcatctgca 1282050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 3130 - 2918
Alignment:
Q  28 tacatcactctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataatatcattt 127  Q
    |||||||||||||||||||||  |||| || |||||||||| |||  |||   ||| || ||| || || ||||| | ||| |||| ||||| ||||||     
T  3130 tacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtgaaattgatctgctgcttcaatgaaaaattctaccataaaatcattc 3031  T
Q  128 ggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagat 227  Q
     ||||| |||| || |||  ||||   |  ||||||| |||||||||||||| ||| ||||| |||||||| ||  | |||||||||||| |||| | ||    
T  3030 agatcttttgttcttataaagtcaggaaggtcctttagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaat 2931  T
Q  228 agctctcatctgc 240  Q
    | || ||||||||    
T  2930 aactatcatctgc 2918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 24103903 - 24103938
Alignment:
Q  209 aaatatccatttgttagatagctctcatctgcatat 244  Q
    |||||||||||||||||||| |||||||||||||||    
T  24103903 aaatatccatttgttagataactctcatctgcatat 24103938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University