View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_68 (Length: 336)
Name: NF8180A_low_68
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 37704454 - 37704509
Alignment:
| Q |
156 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttat |
211 |
Q |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttat |
37704509 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 37698636 - 37698691
Alignment:
| Q |
156 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttat |
211 |
Q |
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| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttat |
37698691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 37437520 - 37437573
Alignment:
| Q |
156 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattccctt |
209 |
Q |
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| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattccctt |
37437573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 37698974 - 37699030
Alignment:
| Q |
157 |
ccaaaaaggttgacttattagattgtttgcaa--attgagtctacgtattcccttat |
211 |
Q |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttat |
37699030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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